Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Ddx56Q9D0R4 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Ddx56Q9D0R4 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC20.96■□□□□ 0.95
Ddx56Q9D0R4 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Ddx56Q9D0R4 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
Ddx56Q9D0R4 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ddx56Q9D0R4 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Ddx56Q9D0R4 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Ddx56Q9D0R4 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ddx56Q9D0R4 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Ddx56Q9D0R4 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Ddx56Q9D0R4 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ddx56Q9D0R4 Gm43759-201ENSMUST00000196925 1261 ntBASIC20.95■□□□□ 0.94
Ddx56Q9D0R4 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Ddx56Q9D0R4 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ddx56Q9D0R4 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ddx56Q9D0R4 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ddx56Q9D0R4 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ddx56Q9D0R4 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ddx56Q9D0R4 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
Ddx56Q9D0R4 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ddx56Q9D0R4 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ddx56Q9D0R4 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ddx56Q9D0R4 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ddx56Q9D0R4 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Ddx56Q9D0R4 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
Ddx56Q9D0R4 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ddx56Q9D0R4 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Ddx56Q9D0R4 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ddx56Q9D0R4 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ddx56Q9D0R4 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
Ddx56Q9D0R4 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ddx56Q9D0R4 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ddx56Q9D0R4 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ddx56Q9D0R4 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Ddx56Q9D0R4 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ddx56Q9D0R4 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Ddx56Q9D0R4 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ddx56Q9D0R4 Gm34220-201ENSMUST00000223001 2709 ntBASIC20.93■□□□□ 0.94
Ddx56Q9D0R4 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC20.93■□□□□ 0.94
Ddx56Q9D0R4 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ddx56Q9D0R4 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ddx56Q9D0R4 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ddx56Q9D0R4 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Ddx56Q9D0R4 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ddx56Q9D0R4 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ddx56Q9D0R4 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ddx56Q9D0R4 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Ddx56Q9D0R4 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Ddx56Q9D0R4 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ddx56Q9D0R4 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ddx56Q9D0R4 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
Ddx56Q9D0R4 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Ddx56Q9D0R4 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ddx56Q9D0R4 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ddx56Q9D0R4 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Ddx56Q9D0R4 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ddx56Q9D0R4 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ddx56Q9D0R4 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ddx56Q9D0R4 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Ddx56Q9D0R4 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Ddx56Q9D0R4 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ddx56Q9D0R4 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ddx56Q9D0R4 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Ddx56Q9D0R4 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
Ddx56Q9D0R4 Gm43909-201ENSMUST00000203443 1876 ntBASIC20.91■□□□□ 0.94
Ddx56Q9D0R4 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ddx56Q9D0R4 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ddx56Q9D0R4 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC20.9■□□□□ 0.94
Ddx56Q9D0R4 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
Ddx56Q9D0R4 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC20.9■□□□□ 0.94
Ddx56Q9D0R4 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Ddx56Q9D0R4 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC20.9■□□□□ 0.94
Ddx56Q9D0R4 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ddx56Q9D0R4 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ddx56Q9D0R4 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ddx56Q9D0R4 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Ddx56Q9D0R4 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Ddx56Q9D0R4 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ddx56Q9D0R4 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC20.89■□□□□ 0.93
Ddx56Q9D0R4 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ddx56Q9D0R4 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ddx56Q9D0R4 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ddx56Q9D0R4 Gm27045-201ENSMUST00000182145 1402 ntBASIC20.88■□□□□ 0.93
Ddx56Q9D0R4 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ddx56Q9D0R4 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Ddx56Q9D0R4 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
Ddx56Q9D0R4 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ddx56Q9D0R4 Gm9847-201ENSMUST00000052528 599 ntBASIC20.88■□□□□ 0.93
Ddx56Q9D0R4 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Ddx56Q9D0R4 Gm15043-201ENSMUST00000118843 1543 ntBASIC20.88■□□□□ 0.93
Ddx56Q9D0R4 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Ddx56Q9D0R4 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ddx56Q9D0R4 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ddx56Q9D0R4 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ddx56Q9D0R4 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC20.87■□□□□ 0.93
Ddx56Q9D0R4 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ddx56Q9D0R4 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC20.87■□□□□ 0.93
Ddx56Q9D0R4 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ddx56Q9D0R4 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 23.2 ms