Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC27.59■■■□□ 2.01
Usp40Q8BWR4 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
Usp40Q8BWR4 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC27.59■■■□□ 2.01
Usp40Q8BWR4 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
Usp40Q8BWR4 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
Usp40Q8BWR4 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
Usp40Q8BWR4 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC27.59■■■□□ 2.01
Usp40Q8BWR4 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC27.58■■■□□ 2.01
Usp40Q8BWR4 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
Usp40Q8BWR4 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC27.57■■■□□ 2
Usp40Q8BWR4 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
Usp40Q8BWR4 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
Usp40Q8BWR4 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC27.57■■■□□ 2
Usp40Q8BWR4 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC27.57■■■□□ 2
Usp40Q8BWR4 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC27.56■■■□□ 2
Usp40Q8BWR4 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC27.56■■■□□ 2
Usp40Q8BWR4 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC27.56■■■□□ 2
Usp40Q8BWR4 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
Usp40Q8BWR4 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC27.56■■■□□ 2
Usp40Q8BWR4 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC27.56■■■□□ 2
Usp40Q8BWR4 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
Usp40Q8BWR4 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
Usp40Q8BWR4 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC27.56■■■□□ 2
Usp40Q8BWR4 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC27.55■■■□□ 2
Usp40Q8BWR4 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
Usp40Q8BWR4 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC27.55■■■□□ 2
Usp40Q8BWR4 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC27.55■■■□□ 2
Usp40Q8BWR4 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC27.55■■■□□ 2
Usp40Q8BWR4 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
Usp40Q8BWR4 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC27.55■■■□□ 2
Usp40Q8BWR4 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC27.55■■■□□ 2
Usp40Q8BWR4 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC27.54■■■□□ 2
Usp40Q8BWR4 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC27.54■■■□□ 2
Usp40Q8BWR4 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
Usp40Q8BWR4 Gm18671-201ENSMUST00000214826 683 ntBASIC27.54■■■□□ 2
Usp40Q8BWR4 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC27.54■■■□□ 2
Usp40Q8BWR4 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
Usp40Q8BWR4 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC27.54■■■□□ 2
Usp40Q8BWR4 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC27.53■■■□□ 2
Usp40Q8BWR4 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC27.53■■■□□ 2
Usp40Q8BWR4 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC27.53■■■□□ 2
Usp40Q8BWR4 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC27.53■■■□□ 2
Usp40Q8BWR4 Gm37179-201ENSMUST00000194862 823 ntBASIC27.53■■■□□ 2
Usp40Q8BWR4 AV356131-201ENSMUST00000206201 750 ntBASIC27.53■■■□□ 2
Usp40Q8BWR4 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC27.53■■■□□ 2
Usp40Q8BWR4 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC27.53■■■□□ 2
Usp40Q8BWR4 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC27.52■■■□□ 2
Usp40Q8BWR4 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
Usp40Q8BWR4 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
Usp40Q8BWR4 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
Usp40Q8BWR4 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC27.52■■■□□ 2
Usp40Q8BWR4 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC27.52■■■□□ 2
Usp40Q8BWR4 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC27.52■■■□□ 2
Usp40Q8BWR4 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC27.52■■■□□ 2
Usp40Q8BWR4 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC27.52■■■□□ 2
Usp40Q8BWR4 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC27.51■■□□□ 1.99
Usp40Q8BWR4 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC27.51■■□□□ 1.99
Usp40Q8BWR4 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
Usp40Q8BWR4 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC27.51■■□□□ 1.99
Usp40Q8BWR4 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC27.51■■□□□ 1.99
Usp40Q8BWR4 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC27.51■■□□□ 1.99
Usp40Q8BWR4 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
Usp40Q8BWR4 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC27.51■■□□□ 1.99
Usp40Q8BWR4 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC27.51■■□□□ 1.99
Usp40Q8BWR4 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
Usp40Q8BWR4 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC27.5■■□□□ 1.99
Usp40Q8BWR4 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
Usp40Q8BWR4 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC27.5■■□□□ 1.99
Usp40Q8BWR4 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
Usp40Q8BWR4 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
Usp40Q8BWR4 Gm14281-201ENSMUST00000121700 1294 ntBASIC27.49■■□□□ 1.99
Usp40Q8BWR4 Gm42778-201ENSMUST00000199644 553 ntBASIC27.49■■□□□ 1.99
Usp40Q8BWR4 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
Usp40Q8BWR4 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC27.49■■□□□ 1.99
Usp40Q8BWR4 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC27.49■■□□□ 1.99
Usp40Q8BWR4 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
Usp40Q8BWR4 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
Usp40Q8BWR4 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC27.48■■□□□ 1.99
Usp40Q8BWR4 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC27.48■■□□□ 1.99
Usp40Q8BWR4 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC27.48■■□□□ 1.99
Usp40Q8BWR4 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
Usp40Q8BWR4 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
Usp40Q8BWR4 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC27.47■■□□□ 1.99
Usp40Q8BWR4 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC27.47■■□□□ 1.99
Usp40Q8BWR4 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
Usp40Q8BWR4 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC27.47■■□□□ 1.99
Usp40Q8BWR4 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
Usp40Q8BWR4 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC27.47■■□□□ 1.99
Usp40Q8BWR4 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
Usp40Q8BWR4 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
Usp40Q8BWR4 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
Usp40Q8BWR4 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
Usp40Q8BWR4 Gm9988-201ENSMUST00000069786 435 ntBASIC27.46■■□□□ 1.99
Usp40Q8BWR4 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
Usp40Q8BWR4 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
Usp40Q8BWR4 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
Usp40Q8BWR4 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC27.45■■□□□ 1.99
Usp40Q8BWR4 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC27.45■■□□□ 1.99
Usp40Q8BWR4 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC27.45■■□□□ 1.99
Usp40Q8BWR4 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC27.45■■□□□ 1.99
Retrieved 100 of 76,532 protein–RNA pairs in 70.5 ms