Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC18.77■□□□□ 0.6
Rnf220Q6PDX6 Gm5131-201ENSMUST00000212776 1238 ntBASIC18.77■□□□□ 0.6
Rnf220Q6PDX6 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Rnf220Q6PDX6 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Rnf220Q6PDX6 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
Rnf220Q6PDX6 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Rnf220Q6PDX6 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Rnf220Q6PDX6 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
Rnf220Q6PDX6 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Rnf220Q6PDX6 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Rnf220Q6PDX6 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Rnf220Q6PDX6 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Rnf220Q6PDX6 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Rnf220Q6PDX6 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Rnf220Q6PDX6 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC18.76■□□□□ 0.59
Rnf220Q6PDX6 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
Rnf220Q6PDX6 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Rnf220Q6PDX6 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC18.76■□□□□ 0.59
Rnf220Q6PDX6 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Rnf220Q6PDX6 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Rnf220Q6PDX6 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Rnf220Q6PDX6 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rnf220Q6PDX6 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rnf220Q6PDX6 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rnf220Q6PDX6 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Rnf220Q6PDX6 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rnf220Q6PDX6 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rnf220Q6PDX6 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
Rnf220Q6PDX6 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rnf220Q6PDX6 Nsd1-206ENSMUST00000224918 1001 ntBASIC18.75■□□□□ 0.59
Rnf220Q6PDX6 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rnf220Q6PDX6 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Rnf220Q6PDX6 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rnf220Q6PDX6 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rnf220Q6PDX6 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rnf220Q6PDX6 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC18.75■□□□□ 0.59
Rnf220Q6PDX6 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Rnf220Q6PDX6 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rnf220Q6PDX6 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC18.74■□□□□ 0.59
Rnf220Q6PDX6 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Rnf220Q6PDX6 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rnf220Q6PDX6 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rnf220Q6PDX6 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rnf220Q6PDX6 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rnf220Q6PDX6 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rnf220Q6PDX6 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rnf220Q6PDX6 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rnf220Q6PDX6 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Rnf220Q6PDX6 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rnf220Q6PDX6 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Rnf220Q6PDX6 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rnf220Q6PDX6 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Rnf220Q6PDX6 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rnf220Q6PDX6 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rnf220Q6PDX6 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rnf220Q6PDX6 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rnf220Q6PDX6 Gm14523-201ENSMUST00000117260 558 ntBASIC18.73■□□□□ 0.59
Rnf220Q6PDX6 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rnf220Q6PDX6 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rnf220Q6PDX6 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rnf220Q6PDX6 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Rnf220Q6PDX6 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Rnf220Q6PDX6 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rnf220Q6PDX6 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rnf220Q6PDX6 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rnf220Q6PDX6 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rnf220Q6PDX6 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rnf220Q6PDX6 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC18.72■□□□□ 0.59
Rnf220Q6PDX6 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC18.72■□□□□ 0.59
Rnf220Q6PDX6 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC18.72■□□□□ 0.59
Rnf220Q6PDX6 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Rnf220Q6PDX6 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rnf220Q6PDX6 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rnf220Q6PDX6 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rnf220Q6PDX6 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Rnf220Q6PDX6 Gm44949-201ENSMUST00000206423 1450 ntBASIC18.71■□□□□ 0.59
Rnf220Q6PDX6 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rnf220Q6PDX6 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rnf220Q6PDX6 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Rnf220Q6PDX6 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rnf220Q6PDX6 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Rnf220Q6PDX6 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rnf220Q6PDX6 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rnf220Q6PDX6 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rnf220Q6PDX6 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Rnf220Q6PDX6 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rnf220Q6PDX6 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rnf220Q6PDX6 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
Rnf220Q6PDX6 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rnf220Q6PDX6 Gm11175-201ENSMUST00000116172 543 ntBASIC18.7■□□□□ 0.58
Rnf220Q6PDX6 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Rnf220Q6PDX6 Gm27502-201ENSMUST00000183495 199 ntBASIC18.7■□□□□ 0.58
Rnf220Q6PDX6 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC18.7■□□□□ 0.58
Rnf220Q6PDX6 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rnf220Q6PDX6 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rnf220Q6PDX6 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rnf220Q6PDX6 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Rnf220Q6PDX6 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rnf220Q6PDX6 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Rnf220Q6PDX6 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 40.7 ms