Protein–RNA interactions for Protein: Q62232

Six2, Homeobox protein SIX2, mousemouse

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six2Q62232 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC21.34■■□□□ 1.01
Six2Q62232 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Six2Q62232 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC21.34■■□□□ 1.01
Six2Q62232 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Six2Q62232 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Six2Q62232 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Six2Q62232 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Six2Q62232 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Six2Q62232 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Six2Q62232 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
Six2Q62232 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Six2Q62232 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
Six2Q62232 Cdkn3-203ENSMUST00000227149 1952 ntBASIC21.33■■□□□ 1.01
Six2Q62232 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
Six2Q62232 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
Six2Q62232 Gm6802-201ENSMUST00000167843 1983 ntBASIC21.32■■□□□ 1
Six2Q62232 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Six2Q62232 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Six2Q62232 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Six2Q62232 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Six2Q62232 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
Six2Q62232 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC21.32■■□□□ 1
Six2Q62232 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Six2Q62232 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC21.32■■□□□ 1
Six2Q62232 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC21.32■■□□□ 1
Six2Q62232 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Six2Q62232 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Six2Q62232 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Six2Q62232 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC21.31■■□□□ 1
Six2Q62232 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC21.31■■□□□ 1
Six2Q62232 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC21.31■■□□□ 1
Six2Q62232 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC21.31■■□□□ 1
Six2Q62232 Gm8770-201ENSMUST00000121113 1109 ntBASIC21.31■■□□□ 1
Six2Q62232 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
Six2Q62232 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC21.31■■□□□ 1
Six2Q62232 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC21.31■■□□□ 1
Six2Q62232 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
Six2Q62232 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC21.31■■□□□ 1
Six2Q62232 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Six2Q62232 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Six2Q62232 Gm27045-201ENSMUST00000182145 1402 ntBASIC21.3■■□□□ 1
Six2Q62232 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Six2Q62232 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC21.3■■□□□ 1
Six2Q62232 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC21.3■■□□□ 1
Six2Q62232 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC21.3■■□□□ 1
Six2Q62232 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Six2Q62232 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC21.3■■□□□ 1
Six2Q62232 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Six2Q62232 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Six2Q62232 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Six2Q62232 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
Six2Q62232 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC21.29■■□□□ 1
Six2Q62232 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Six2Q62232 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Six2Q62232 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Six2Q62232 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Six2Q62232 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
Six2Q62232 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC21.29■■□□□ 1
Six2Q62232 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC21.29■■□□□ 1
Six2Q62232 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC21.29■■□□□ 1
Six2Q62232 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
Six2Q62232 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC21.29■■□□□ 1
Six2Q62232 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC21.29■■□□□ 1
Six2Q62232 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC21.29■■□□□ 1
Six2Q62232 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Six2Q62232 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC21.28■■□□□ 1
Six2Q62232 Golgb1-201ENSMUST00000023534 498 ntBASIC21.28■■□□□ 1
Six2Q62232 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
Six2Q62232 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC21.28■■□□□ 1
Six2Q62232 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC21.28■■□□□ 1
Six2Q62232 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC21.27■■□□□ 1
Six2Q62232 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Six2Q62232 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Six2Q62232 Gm6085-201ENSMUST00000182774 1470 ntBASIC21.26■□□□□ 0.99
Six2Q62232 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Six2Q62232 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC21.26■□□□□ 0.99
Six2Q62232 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC21.26■□□□□ 0.99
Six2Q62232 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Six2Q62232 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Six2Q62232 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Six2Q62232 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Six2Q62232 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Six2Q62232 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Six2Q62232 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
Six2Q62232 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Six2Q62232 Gm12922-201ENSMUST00000120626 809 ntBASIC21.25■□□□□ 0.99
Six2Q62232 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Six2Q62232 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC21.25■□□□□ 0.99
Six2Q62232 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Six2Q62232 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
Six2Q62232 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
Six2Q62232 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Six2Q62232 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Six2Q62232 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Six2Q62232 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Six2Q62232 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Six2Q62232 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
Six2Q62232 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
Six2Q62232 Hsf1-204ENSMUST00000226872 2104 ntBASIC21.24■□□□□ 0.99
Six2Q62232 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 17.7 ms