Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Gm43799-201ENSMUST00000201845 579 ntBASIC19.83■□□□□ 0.77
Col9a1Q05722 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC19.83■□□□□ 0.77
Col9a1Q05722 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC19.83■□□□□ 0.76
Col9a1Q05722 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC19.83■□□□□ 0.76
Col9a1Q05722 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Col9a1Q05722 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Col9a1Q05722 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
Col9a1Q05722 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Col9a1Q05722 Gm9484-201ENSMUST00000195892 1159 ntBASIC19.82■□□□□ 0.76
Col9a1Q05722 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Col9a1Q05722 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Col9a1Q05722 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
Col9a1Q05722 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col9a1Q05722 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Col9a1Q05722 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC19.81■□□□□ 0.76
Col9a1Q05722 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col9a1Q05722 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC19.81■□□□□ 0.76
Col9a1Q05722 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col9a1Q05722 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC19.81■□□□□ 0.76
Col9a1Q05722 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col9a1Q05722 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col9a1Q05722 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC19.8■□□□□ 0.76
Col9a1Q05722 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Col9a1Q05722 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col9a1Q05722 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col9a1Q05722 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col9a1Q05722 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col9a1Q05722 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col9a1Q05722 Gm5643-201ENSMUST00000117081 966 ntBASIC19.79■□□□□ 0.76
Col9a1Q05722 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Col9a1Q05722 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC19.79■□□□□ 0.76
Col9a1Q05722 Gm44672-201ENSMUST00000206944 1098 ntBASIC19.79■□□□□ 0.76
Col9a1Q05722 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Col9a1Q05722 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC19.79■□□□□ 0.76
Col9a1Q05722 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC19.79■□□□□ 0.76
Col9a1Q05722 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC19.79■□□□□ 0.76
Col9a1Q05722 AC154649.1-201ENSMUST00000227392 384 ntBASIC19.79■□□□□ 0.76
Col9a1Q05722 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col9a1Q05722 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Col9a1Q05722 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col9a1Q05722 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC19.78■□□□□ 0.76
Col9a1Q05722 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC19.78■□□□□ 0.76
Col9a1Q05722 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col9a1Q05722 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
Col9a1Q05722 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col9a1Q05722 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col9a1Q05722 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col9a1Q05722 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Col9a1Q05722 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Col9a1Q05722 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC19.77■□□□□ 0.76
Col9a1Q05722 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC19.77■□□□□ 0.76
Col9a1Q05722 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Col9a1Q05722 Gm6211-202ENSMUST00000167849 925 ntBASIC19.77■□□□□ 0.76
Col9a1Q05722 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC19.77■□□□□ 0.76
Col9a1Q05722 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Col9a1Q05722 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Col9a1Q05722 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col9a1Q05722 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col9a1Q05722 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col9a1Q05722 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC19.76■□□□□ 0.75
Col9a1Q05722 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col9a1Q05722 Gm14464-201ENSMUST00000119658 1254 ntBASIC19.76■□□□□ 0.75
Col9a1Q05722 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC19.76■□□□□ 0.75
Col9a1Q05722 Gm27275-201ENSMUST00000184318 272 ntBASIC19.76■□□□□ 0.75
Col9a1Q05722 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col9a1Q05722 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col9a1Q05722 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col9a1Q05722 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Col9a1Q05722 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC19.75■□□□□ 0.75
Col9a1Q05722 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col9a1Q05722 Gm11249-201ENSMUST00000117071 859 ntBASIC19.75■□□□□ 0.75
Col9a1Q05722 Gm6433-201ENSMUST00000118634 875 ntBASIC19.75■□□□□ 0.75
Col9a1Q05722 Gm42790-201ENSMUST00000201268 969 ntBASIC19.75■□□□□ 0.75
Col9a1Q05722 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
Col9a1Q05722 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col9a1Q05722 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col9a1Q05722 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col9a1Q05722 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Col9a1Q05722 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Col9a1Q05722 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col9a1Q05722 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col9a1Q05722 Kdm3b-204ENSMUST00000224715 2032 ntBASIC19.74■□□□□ 0.75
Col9a1Q05722 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col9a1Q05722 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Col9a1Q05722 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col9a1Q05722 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Col9a1Q05722 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC19.73■□□□□ 0.75
Col9a1Q05722 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
Col9a1Q05722 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
Col9a1Q05722 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col9a1Q05722 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col9a1Q05722 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col9a1Q05722 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Col9a1Q05722 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
Col9a1Q05722 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Col9a1Q05722 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Col9a1Q05722 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col9a1Q05722 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Col9a1Q05722 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col9a1Q05722 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 76.3 ms