Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 AC152827.1-201ENSMUST00000221143 2189 ntBASIC21.14■□□□□ 0.98
Shmt1P50431 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC21.14■□□□□ 0.98
Shmt1P50431 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC21.14■□□□□ 0.98
Shmt1P50431 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Shmt1P50431 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
Shmt1P50431 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
Shmt1P50431 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Shmt1P50431 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
Shmt1P50431 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Shmt1P50431 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Shmt1P50431 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Shmt1P50431 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Shmt1P50431 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
Shmt1P50431 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Shmt1P50431 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
Shmt1P50431 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Shmt1P50431 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Shmt1P50431 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Shmt1P50431 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Shmt1P50431 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
Shmt1P50431 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Shmt1P50431 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Shmt1P50431 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Shmt1P50431 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC21.12■□□□□ 0.97
Shmt1P50431 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC21.12■□□□□ 0.97
Shmt1P50431 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC21.12■□□□□ 0.97
Shmt1P50431 Gm2011-201ENSMUST00000203124 1263 ntBASIC21.12■□□□□ 0.97
Shmt1P50431 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Shmt1P50431 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Shmt1P50431 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC21.12■□□□□ 0.97
Shmt1P50431 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Shmt1P50431 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC21.12■□□□□ 0.97
Shmt1P50431 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Shmt1P50431 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
Shmt1P50431 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC21.11■□□□□ 0.97
Shmt1P50431 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC21.11■□□□□ 0.97
Shmt1P50431 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC21.11■□□□□ 0.97
Shmt1P50431 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC21.11■□□□□ 0.97
Shmt1P50431 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
Shmt1P50431 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Shmt1P50431 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC21.11■□□□□ 0.97
Shmt1P50431 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Shmt1P50431 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
Shmt1P50431 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Shmt1P50431 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Shmt1P50431 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC21.1■□□□□ 0.97
Shmt1P50431 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC21.1■□□□□ 0.97
Shmt1P50431 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Shmt1P50431 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Shmt1P50431 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Shmt1P50431 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Shmt1P50431 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC21.09■□□□□ 0.97
Shmt1P50431 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Shmt1P50431 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Shmt1P50431 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Shmt1P50431 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC21.09■□□□□ 0.97
Shmt1P50431 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
Shmt1P50431 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Shmt1P50431 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Shmt1P50431 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
Shmt1P50431 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC21.08■□□□□ 0.97
Shmt1P50431 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Shmt1P50431 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Shmt1P50431 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Shmt1P50431 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Shmt1P50431 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Shmt1P50431 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Shmt1P50431 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC21.07■□□□□ 0.96
Shmt1P50431 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Shmt1P50431 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC21.07■□□□□ 0.96
Shmt1P50431 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Shmt1P50431 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
Shmt1P50431 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC21.07■□□□□ 0.96
Shmt1P50431 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Shmt1P50431 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
Shmt1P50431 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Shmt1P50431 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Shmt1P50431 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC21.07■□□□□ 0.96
Shmt1P50431 Gm43006-201ENSMUST00000197702 1602 ntBASIC21.06■□□□□ 0.96
Shmt1P50431 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Shmt1P50431 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Shmt1P50431 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Shmt1P50431 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Shmt1P50431 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Shmt1P50431 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Shmt1P50431 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Shmt1P50431 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC21.05■□□□□ 0.96
Shmt1P50431 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Shmt1P50431 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Shmt1P50431 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
Shmt1P50431 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Shmt1P50431 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC21.04■□□□□ 0.96
Shmt1P50431 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Shmt1P50431 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Shmt1P50431 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
Shmt1P50431 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Shmt1P50431 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Shmt1P50431 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Shmt1P50431 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Shmt1P50431 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 18.7 ms