Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Hmgb3O54879 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Hmgb3O54879 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Hmgb3O54879 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Hmgb3O54879 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Hmgb3O54879 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
Hmgb3O54879 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Hmgb3O54879 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Hmgb3O54879 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC16.51■□□□□ 0.23
Hmgb3O54879 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Hmgb3O54879 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Hmgb3O54879 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Hmgb3O54879 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Hmgb3O54879 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Hmgb3O54879 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC16.51■□□□□ 0.23
Hmgb3O54879 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Hmgb3O54879 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Hmgb3O54879 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Hmgb3O54879 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Hmgb3O54879 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Hmgb3O54879 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Hmgb3O54879 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC16.5■□□□□ 0.23
Hmgb3O54879 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Hmgb3O54879 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Hmgb3O54879 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Hmgb3O54879 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Hmgb3O54879 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Hmgb3O54879 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Hmgb3O54879 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC16.5■□□□□ 0.23
Hmgb3O54879 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Hmgb3O54879 Gm16437-201ENSMUST00000025669 507 ntBASIC16.5■□□□□ 0.23
Hmgb3O54879 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Hmgb3O54879 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Hmgb3O54879 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC16.5■□□□□ 0.23
Hmgb3O54879 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Hmgb3O54879 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Hmgb3O54879 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Hmgb3O54879 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Hmgb3O54879 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Hmgb3O54879 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Hmgb3O54879 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Hmgb3O54879 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Hmgb3O54879 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC16.49■□□□□ 0.23
Hmgb3O54879 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Hmgb3O54879 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Hmgb3O54879 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Hmgb3O54879 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Hmgb3O54879 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC16.49■□□□□ 0.23
Hmgb3O54879 AC151971.4-201ENSMUST00000214717 704 ntBASIC16.49■□□□□ 0.23
Hmgb3O54879 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Hmgb3O54879 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Hmgb3O54879 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
Hmgb3O54879 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Hmgb3O54879 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Hmgb3O54879 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Hmgb3O54879 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Hmgb3O54879 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Hmgb3O54879 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Hmgb3O54879 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Hmgb3O54879 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Hmgb3O54879 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Hmgb3O54879 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC16.48■□□□□ 0.23
Hmgb3O54879 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC16.48■□□□□ 0.23
Hmgb3O54879 Scarna2-201ENSMUST00000157560 414 ntBASIC16.48■□□□□ 0.23
Hmgb3O54879 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
Hmgb3O54879 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Hmgb3O54879 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC16.48■□□□□ 0.23
Hmgb3O54879 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Hmgb3O54879 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Hmgb3O54879 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Hmgb3O54879 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Hmgb3O54879 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC16.48■□□□□ 0.23
Hmgb3O54879 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Hmgb3O54879 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Hmgb3O54879 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Hmgb3O54879 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Hmgb3O54879 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Hmgb3O54879 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC16.47■□□□□ 0.23
Hmgb3O54879 Nsd1-206ENSMUST00000224918 1001 ntBASIC16.47■□□□□ 0.23
Hmgb3O54879 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Hmgb3O54879 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Hmgb3O54879 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
Hmgb3O54879 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Hmgb3O54879 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Hmgb3O54879 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Hmgb3O54879 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Hmgb3O54879 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC16.46■□□□□ 0.23
Hmgb3O54879 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Hmgb3O54879 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Hmgb3O54879 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Hmgb3O54879 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Hmgb3O54879 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC16.46■□□□□ 0.23
Hmgb3O54879 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Hmgb3O54879 AC122428.2-201ENSMUST00000216321 1832 ntBASIC16.46■□□□□ 0.23
Hmgb3O54879 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
Hmgb3O54879 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.22
Hmgb3O54879 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Hmgb3O54879 Galnt13-203ENSMUST00000112635 7531 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Hmgb3O54879 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC16.46■□□□□ 0.22
Hmgb3O54879 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 35.6 ms