Protein–RNA interactions for Protein: A0A0J9YTW6

Scn2a, Sodium channel protein, mousemouse

Predictions only

Length 2,006 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn2aA0A0J9YTW6 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC18.35■□□□□ 0.53
Scn2aA0A0J9YTW6 Gm43017-201ENSMUST00000198296 752 ntBASIC18.35■□□□□ 0.53
Scn2aA0A0J9YTW6 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Scn2aA0A0J9YTW6 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC18.35■□□□□ 0.53
Scn2aA0A0J9YTW6 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Scn2aA0A0J9YTW6 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
Scn2aA0A0J9YTW6 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Scn2aA0A0J9YTW6 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Scn2aA0A0J9YTW6 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Scn2aA0A0J9YTW6 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
Scn2aA0A0J9YTW6 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC18.34■□□□□ 0.53
Scn2aA0A0J9YTW6 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Scn2aA0A0J9YTW6 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
Scn2aA0A0J9YTW6 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Scn2aA0A0J9YTW6 Gm9207-201ENSMUST00000198773 1115 ntBASIC18.33■□□□□ 0.53
Scn2aA0A0J9YTW6 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Scn2aA0A0J9YTW6 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
Scn2aA0A0J9YTW6 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Scn2aA0A0J9YTW6 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Scn2aA0A0J9YTW6 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
Scn2aA0A0J9YTW6 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Scn2aA0A0J9YTW6 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.52
Scn2aA0A0J9YTW6 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Scn2aA0A0J9YTW6 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Scn2aA0A0J9YTW6 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Scn2aA0A0J9YTW6 Gm2011-201ENSMUST00000203124 1263 ntBASIC18.33■□□□□ 0.52
Scn2aA0A0J9YTW6 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
Scn2aA0A0J9YTW6 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Scn2aA0A0J9YTW6 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Scn2aA0A0J9YTW6 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Scn2aA0A0J9YTW6 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Scn2aA0A0J9YTW6 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
Scn2aA0A0J9YTW6 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Scn2aA0A0J9YTW6 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Scn2aA0A0J9YTW6 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
Scn2aA0A0J9YTW6 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
Scn2aA0A0J9YTW6 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Scn2aA0A0J9YTW6 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Scn2aA0A0J9YTW6 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Scn2aA0A0J9YTW6 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Scn2aA0A0J9YTW6 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Scn2aA0A0J9YTW6 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC18.31■□□□□ 0.52
Scn2aA0A0J9YTW6 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Scn2aA0A0J9YTW6 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Scn2aA0A0J9YTW6 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
Scn2aA0A0J9YTW6 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Scn2aA0A0J9YTW6 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC18.31■□□□□ 0.52
Scn2aA0A0J9YTW6 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Scn2aA0A0J9YTW6 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn2aA0A0J9YTW6 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Scn2aA0A0J9YTW6 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn2aA0A0J9YTW6 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn2aA0A0J9YTW6 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Scn2aA0A0J9YTW6 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn2aA0A0J9YTW6 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn2aA0A0J9YTW6 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Scn2aA0A0J9YTW6 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Scn2aA0A0J9YTW6 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn2aA0A0J9YTW6 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn2aA0A0J9YTW6 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Scn2aA0A0J9YTW6 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn2aA0A0J9YTW6 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Scn2aA0A0J9YTW6 AC165080.2-201ENSMUST00000217491 1530 ntBASIC18.29■□□□□ 0.52
Scn2aA0A0J9YTW6 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Scn2aA0A0J9YTW6 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Scn2aA0A0J9YTW6 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Scn2aA0A0J9YTW6 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC18.29■□□□□ 0.52
Scn2aA0A0J9YTW6 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Scn2aA0A0J9YTW6 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Scn2aA0A0J9YTW6 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Scn2aA0A0J9YTW6 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Scn2aA0A0J9YTW6 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Scn2aA0A0J9YTW6 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Scn2aA0A0J9YTW6 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Scn2aA0A0J9YTW6 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Scn2aA0A0J9YTW6 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Scn2aA0A0J9YTW6 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Scn2aA0A0J9YTW6 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Scn2aA0A0J9YTW6 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Scn2aA0A0J9YTW6 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Scn2aA0A0J9YTW6 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Scn2aA0A0J9YTW6 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Scn2aA0A0J9YTW6 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC18.28■□□□□ 0.52
Scn2aA0A0J9YTW6 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
Scn2aA0A0J9YTW6 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
Scn2aA0A0J9YTW6 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Scn2aA0A0J9YTW6 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
Scn2aA0A0J9YTW6 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Scn2aA0A0J9YTW6 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Scn2aA0A0J9YTW6 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Scn2aA0A0J9YTW6 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Scn2aA0A0J9YTW6 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Scn2aA0A0J9YTW6 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Scn2aA0A0J9YTW6 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Scn2aA0A0J9YTW6 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC18.27■□□□□ 0.51
Scn2aA0A0J9YTW6 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Scn2aA0A0J9YTW6 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Scn2aA0A0J9YTW6 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Scn2aA0A0J9YTW6 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC18.26■□□□□ 0.51
Scn2aA0A0J9YTW6 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC18.26■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 24.2 ms