Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Npas2-201ENSMUST00000056815 4236 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
Hoxd3P09027 Atp6v1e1-201ENSMUST00000019354 1312 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
Hoxd3P09027 Lrriq3-203ENSMUST00000194376 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC8.66□□□□□ -1.02
Hoxd3P09027 Gm33594-201ENSMUST00000209502 1333 ntTSL 5 BASIC8.66□□□□□ -1.02
Hoxd3P09027 Svil-211ENSMUST00000143254 6594 ntAPPRIS ALT2 TSL 5 BASIC8.66□□□□□ -1.02
Hoxd3P09027 Olfr1288-201ENSMUST00000104889 939 ntAPPRIS P1 BASIC8.66□□□□□ -1.02
Hoxd3P09027 Rbm3-205ENSMUST00000115619 969 ntAPPRIS ALT1 TSL 3 BASIC8.66□□□□□ -1.02
Hoxd3P09027 Vmn1r-ps132-201ENSMUST00000120434 892 ntBASIC8.66□□□□□ -1.02
Hoxd3P09027 Gm16323-201ENSMUST00000134920 556 ntTSL 3 BASIC8.66□□□□□ -1.02
Hoxd3P09027 Nop56-204ENSMUST00000136621 868 ntTSL 5 BASIC8.66□□□□□ -1.02
Hoxd3P09027 AC158605.1-201ENSMUST00000156803 764 ntTSL 3 BASIC8.66□□□□□ -1.02
Hoxd3P09027 Gm22817-201ENSMUST00000157448 356 ntBASIC8.66□□□□□ -1.02
Hoxd3P09027 Gm22379-201ENSMUST00000157480 131 ntBASIC8.66□□□□□ -1.02
Hoxd3P09027 Gm15996-201ENSMUST00000161925 762 ntTSL 5 BASIC8.66□□□□□ -1.02
Hoxd3P09027 Prr3-206ENSMUST00000173585 770 ntAPPRIS ALT2 TSL 2 BASIC8.66□□□□□ -1.02
Hoxd3P09027 Gm19246-201ENSMUST00000173599 255 ntBASIC8.66□□□□□ -1.02
Hoxd3P09027 Clec7a-202ENSMUST00000184581 707 ntAPPRIS P2 TSL 3 BASIC8.66□□□□□ -1.02
Hoxd3P09027 Gm29292-201ENSMUST00000186169 766 ntTSL 3 BASIC8.66□□□□□ -1.02
Hoxd3P09027 Rbp2-202ENSMUST00000187905 611 ntAPPRIS P1 TSL 3 BASIC8.66□□□□□ -1.02
Hoxd3P09027 Gm28140-201ENSMUST00000190148 1271 ntTSL 5 BASIC8.66□□□□□ -1.02
Hoxd3P09027 Gm9116-201ENSMUST00000192400 1018 ntBASIC8.66□□□□□ -1.02
Hoxd3P09027 Gm9884-201ENSMUST00000194343 1222 ntBASIC8.66□□□□□ -1.02
Hoxd3P09027 Rrh-205ENSMUST00000196902 1250 ntAPPRIS P2 TSL 1 (best) BASIC8.66□□□□□ -1.02
Hoxd3P09027 Gm42650-201ENSMUST00000197038 575 ntTSL 2 BASIC8.66□□□□□ -1.02
Hoxd3P09027 Gm43001-201ENSMUST00000198925 603 ntTSL 3 BASIC8.66□□□□□ -1.02
Hoxd3P09027 5033423K11Rik-202ENSMUST00000202802 1162 ntBASIC8.66□□□□□ -1.02
Hoxd3P09027 Gm29797-201ENSMUST00000207856 755 ntAPPRIS P1 TSL 5 BASIC8.66□□□□□ -1.02
Hoxd3P09027 Gm44809-201ENSMUST00000208305 993 ntBASIC8.66□□□□□ -1.02
Hoxd3P09027 Gm45120-201ENSMUST00000208880 408 ntBASIC8.66□□□□□ -1.02
Hoxd3P09027 Gm45592-201ENSMUST00000209605 1043 ntBASIC8.66□□□□□ -1.02
Hoxd3P09027 AC120394.2-201ENSMUST00000213905 702 ntTSL 5 BASIC8.66□□□□□ -1.02
Hoxd3P09027 AC069561.2-201ENSMUST00000217596 420 ntBASIC8.66□□□□□ -1.02
Hoxd3P09027 Gm36074-201ENSMUST00000221383 591 ntTSL 5 BASIC8.66□□□□□ -1.02
Hoxd3P09027 Ap3s1-202ENSMUST00000224622 978 ntBASIC8.66□□□□□ -1.02
Hoxd3P09027 Gm4861-201ENSMUST00000068546 957 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
Hoxd3P09027 1700001K19Rik-201ENSMUST00000070659 955 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
Hoxd3P09027 Gm5805-201ENSMUST00000072779 456 ntBASIC8.66□□□□□ -1.02
Hoxd3P09027 Vmn1r6-201ENSMUST00000079669 1058 ntAPPRIS P2 BASIC8.66□□□□□ -1.02
Hoxd3P09027 Ifitm2-201ENSMUST00000081649 655 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
Hoxd3P09027 Gm10020-201ENSMUST00000081993 612 ntBASIC8.66□□□□□ -1.02
Hoxd3P09027 Vmn1r198-201ENSMUST00000091733 903 ntAPPRIS P2 BASIC8.66□□□□□ -1.02
Hoxd3P09027 Cenpu-202ENSMUST00000093518 783 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
Hoxd3P09027 Gm10530-201ENSMUST00000097514 1169 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
Hoxd3P09027 Ephx3-201ENSMUST00000087721 2416 ntAPPRIS P3 TSL 1 (best) BASIC8.66□□□□□ -1.02
Hoxd3P09027 Matn2-201ENSMUST00000022947 3551 ntAPPRIS P2 TSL 1 (best) BASIC8.66□□□□□ -1.02
Hoxd3P09027 Gm20498-203ENSMUST00000166664 2284 ntAPPRIS P1 TSL 2 BASIC8.66□□□□□ -1.02
Hoxd3P09027 Slc22a4-201ENSMUST00000020586 2263 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
Hoxd3P09027 Gsdme-205ENSMUST00000170142 2133 ntAPPRIS P2 TSL 1 (best) BASIC8.66□□□□□ -1.02
Hoxd3P09027 Wdr19-204ENSMUST00000203653 6279 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
Hoxd3P09027 Rps6ka6-204ENSMUST00000113428 4135 ntAPPRIS ALT2 TSL 5 BASIC8.66□□□□□ -1.02
Hoxd3P09027 Gtf2i-224ENSMUST00000174772 4078 ntAPPRIS ALT2 TSL 2 BASIC8.66□□□□□ -1.02
Hoxd3P09027 Ube2v1-202ENSMUST00000109207 2041 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
Hoxd3P09027 Rtn4ip1-201ENSMUST00000054418 2981 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
Hoxd3P09027 Cnga4-202ENSMUST00000210344 1977 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
Hoxd3P09027 Slc4a9-202ENSMUST00000115694 2861 ntAPPRIS ALT2 TSL 5 BASIC8.66□□□□□ -1.02
Hoxd3P09027 Gm11525-201ENSMUST00000134436 2804 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
Hoxd3P09027 Rsl1-201ENSMUST00000021997 2591 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
Hoxd3P09027 Anks1b-224ENSMUST00000182960 3397 ntTSL 5 BASIC8.65□□□□□ -1.02
Hoxd3P09027 Arhgap19-204ENSMUST00000177495 1652 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
Hoxd3P09027 Ccpg1-201ENSMUST00000037977 3151 ntAPPRIS P3 TSL 1 (best) BASIC8.65□□□□□ -1.02
Hoxd3P09027 Mark3-208ENSMUST00000221753 2394 ntTSL 5 BASIC8.65□□□□□ -1.02
Hoxd3P09027 Spice1-201ENSMUST00000050897 4627 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
Hoxd3P09027 Gm11868-201ENSMUST00000121594 1478 ntBASIC8.65□□□□□ -1.02
Hoxd3P09027 Foxn2-201ENSMUST00000112238 5085 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
Hoxd3P09027 1500002C15Rik-201ENSMUST00000178987 2183 ntBASIC8.65□□□□□ -1.02
Hoxd3P09027 Gm45532-201ENSMUST00000210342 3620 ntBASIC8.65□□□□□ -1.02
Hoxd3P09027 Stim1-209ENSMUST00000211457 2183 ntTSL 5 BASIC8.65□□□□□ -1.02
Hoxd3P09027 Lsmem1-202ENSMUST00000220951 2152 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
Hoxd3P09027 Mindy1-202ENSMUST00000107187 2827 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
Hoxd3P09027 Trim25-201ENSMUST00000000284 5566 ntAPPRIS ALT2 TSL 1 (best) BASIC8.65□□□□□ -1.02
Hoxd3P09027 Dcaf8-202ENSMUST00000191689 2754 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
Hoxd3P09027 Amotl1-201ENSMUST00000013220 8957 ntAPPRIS P2 TSL 1 (best) BASIC8.65□□□□□ -1.02
Hoxd3P09027 Rtbdn-202ENSMUST00000109740 1363 ntAPPRIS P2 TSL 1 (best) BASIC8.65□□□□□ -1.02
Hoxd3P09027 Mab21l3-202ENSMUST00000118411 2700 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
Hoxd3P09027 Coq8a-201ENSMUST00000027766 4026 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
Hoxd3P09027 Chac2-202ENSMUST00000101394 1315 ntAPPRIS P3 TSL 1 (best) BASIC8.65□□□□□ -1.02
Hoxd3P09027 4930456G14Rik-201ENSMUST00000193054 1330 ntBASIC8.65□□□□□ -1.02
Hoxd3P09027 Olfr710-201ENSMUST00000055923 1312 ntAPPRIS P1 TSL 5 BASIC8.65□□□□□ -1.02
Hoxd3P09027 Popdc2-202ENSMUST00000114739 1992 ntAPPRIS ALT2 TSL 1 (best) BASIC8.65□□□□□ -1.02
Hoxd3P09027 Dtx3l-202ENSMUST00000114885 2648 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
Hoxd3P09027 Topbp1-201ENSMUST00000035164 5224 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
Hoxd3P09027 Herc4-201ENSMUST00000020258 3898 ntAPPRIS P2 TSL 1 (best) BASIC8.65□□□□□ -1.02
Hoxd3P09027 Anapc4-201ENSMUST00000031072 3854 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
Hoxd3P09027 Rs1-202ENSMUST00000112368 731 ntTSL 3 BASIC8.65□□□□□ -1.02
Hoxd3P09027 Fam3a-204ENSMUST00000114141 1243 ntTSL 5 BASIC8.65□□□□□ -1.02
Hoxd3P09027 Gm9133-201ENSMUST00000118289 540 ntBASIC8.65□□□□□ -1.02
Hoxd3P09027 Gimap4-203ENSMUST00000118802 771 ntTSL 3 BASIC8.65□□□□□ -1.02
Hoxd3P09027 Gm11320-201ENSMUST00000119434 463 ntBASIC8.65□□□□□ -1.02
Hoxd3P09027 4930419G24Rik-201ENSMUST00000125494 1058 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
Hoxd3P09027 Ndufc2-202ENSMUST00000149122 470 ntTSL 2 BASIC8.65□□□□□ -1.02
Hoxd3P09027 Mfsd11-212ENSMUST00000153084 1194 ntTSL 5 BASIC8.65□□□□□ -1.02
Hoxd3P09027 Gm10631-201ENSMUST00000153288 494 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
Hoxd3P09027 Gm22818-201ENSMUST00000157446 104 ntBASIC8.65□□□□□ -1.02
Hoxd3P09027 Dydc1-202ENSMUST00000161837 829 ntAPPRIS ALT2 TSL 5 BASIC8.65□□□□□ -1.02
Hoxd3P09027 Gm20536-201ENSMUST00000172588 406 ntTSL 3 BASIC8.65□□□□□ -1.02
Hoxd3P09027 Vmn1r-ps53-201ENSMUST00000173066 922 ntBASIC8.65□□□□□ -1.02
Hoxd3P09027 Isl1-202ENSMUST00000176044 1198 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
Hoxd3P09027 Gm5624-202ENSMUST00000178184 492 ntAPPRIS ALT2 TSL 5 BASIC8.65□□□□□ -1.02
Hoxd3P09027 1110036E04Rik-201ENSMUST00000181151 777 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
Hoxd3P09027 Gm17798-201ENSMUST00000182282 1035 ntBASIC8.65□□□□□ -1.02
Retrieved 100 of 76,532 protein–RNA pairs in 60.7 ms