Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Tagln3-201ENSMUST00000096057 1240 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Ccdc28bQ8CEG5 Atxn1l-201ENSMUST00000093162 7526 ntAPPRIS P1 TSL 2 BASIC10.49□□□□□ -0.73
Ccdc28bQ8CEG5 Robo4-202ENSMUST00000115046 3878 ntAPPRIS ALT2 TSL 2 BASIC10.49□□□□□ -0.73
Ccdc28bQ8CEG5 Smarca2-201ENSMUST00000025862 5921 ntAPPRIS P2 TSL 5 BASIC10.49□□□□□ -0.73
Ccdc28bQ8CEG5 5330439B14Rik-201ENSMUST00000194811 1392 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Ccdc28bQ8CEG5 Gm12436-201ENSMUST00000131099 2959 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Ccdc28bQ8CEG5 Sik2-206ENSMUST00000176824 5369 ntAPPRIS ALT2 TSL 5 BASIC10.49□□□□□ -0.73
Ccdc28bQ8CEG5 Smad9-201ENSMUST00000029371 5368 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Ccdc28bQ8CEG5 Agbl4-203ENSMUST00000106587 2631 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Ccdc28bQ8CEG5 1700006J14Rik-203ENSMUST00000160091 2629 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Ccdc28bQ8CEG5 Celf2-224ENSMUST00000182879 2223 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Ccdc28bQ8CEG5 Cfap53-201ENSMUST00000114895 1888 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Ccdc28bQ8CEG5 Phf8-202ENSMUST00000046962 3105 ntAPPRIS P3 TSL 1 (best) BASIC10.49□□□□□ -0.73
Ccdc28bQ8CEG5 Shank2-201ENSMUST00000097929 4418 ntTSL 5 BASIC10.49□□□□□ -0.73
Ccdc28bQ8CEG5 Gpr63-201ENSMUST00000038920 2370 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Olfm4-203ENSMUST00000228749 2801 ntAPPRIS P1 BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Gm20658-202ENSMUST00000177059 1950 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Prim2-201ENSMUST00000027312 1975 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Gm10093-201ENSMUST00000079363 1977 ntAPPRIS P1 BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Myo1c-203ENSMUST00000102505 4652 ntAPPRIS ALT1 TSL 5 BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Stau2-202ENSMUST00000054668 2907 ntAPPRIS P1 TSL 5 BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Fam122b-201ENSMUST00000071023 4334 ntAPPRIS P3 TSL 1 (best) BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Pde4d-209ENSMUST00000122041 2554 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Zfp185-201ENSMUST00000114546 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Col4a4-201ENSMUST00000087050 10108 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Flna-201ENSMUST00000033699 8312 ntAPPRIS ALT2 TSL 5 BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Stau1-202ENSMUST00000109235 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Ovgp1-201ENSMUST00000000573 2616 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Ube2l3-201ENSMUST00000090192 2609 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Atp11c-202ENSMUST00000101527 6044 ntAPPRIS P4 TSL 1 (best) BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Wdr46-ps-201ENSMUST00000200591 1712 ntBASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Gpa33-204ENSMUST00000166860 2227 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Cyp4f16-208ENSMUST00000169591 2242 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 AC133934.1-201ENSMUST00000223052 1761 ntBASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Casz1-201ENSMUST00000094464 4349 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Hint1-202ENSMUST00000117710 580 ntTSL 2 BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Gm9133-201ENSMUST00000118289 540 ntBASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Gm14208-201ENSMUST00000119645 678 ntBASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Gm11450-201ENSMUST00000121144 333 ntBASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Vmn2r-ps54-203ENSMUST00000150856 1142 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Gm14249-201ENSMUST00000156239 1017 ntTSL 5 BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Myl6-201ENSMUST00000164181 665 ntAPPRIS P2 TSL 1 (best) BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Snord55-201ENSMUST00000174939 79 ntBASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 1700088E04Rik-206ENSMUST00000187550 1168 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 1700063K16Rik-202ENSMUST00000191341 952 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Gm44753-202ENSMUST00000208297 562 ntTSL 5 BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Gm7594-201ENSMUST00000218595 871 ntBASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 AC116680.1-201ENSMUST00000222804 613 ntTSL 3 BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Tnfsf13b-201ENSMUST00000033892 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Prr15l-202ENSMUST00000062172 1242 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Osgep-202ENSMUST00000159292 3388 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Gm16429-202ENSMUST00000201400 1848 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 AC090962.2-201ENSMUST00000225064 1801 ntBASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Gm7971-201ENSMUST00000086950 1848 ntAPPRIS P1 TSL 5 BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Eno2-202ENSMUST00000112476 2386 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Vwce-201ENSMUST00000055115 3540 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Nod1-202ENSMUST00000168172 4064 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Fam114a2-201ENSMUST00000020831 2557 ntAPPRIS P3 TSL 1 (best) BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Stx16-201ENSMUST00000044638 3731 ntAPPRIS ALT2 TSL 5 BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Wdr19-204ENSMUST00000203653 6279 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Pex5l-204ENSMUST00000108224 2721 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Phf21a-205ENSMUST00000111291 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Ctnnd1-204ENSMUST00000099941 5783 ntTSL 5 BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Zfp830-201ENSMUST00000056677 1591 ntAPPRIS P1 BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Foxm1-202ENSMUST00000112148 2229 ntAPPRIS ALT2 TSL 5 BASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Gm42879-201ENSMUST00000198656 2214 ntBASIC10.48□□□□□ -0.73
Ccdc28bQ8CEG5 Nmt1-201ENSMUST00000021314 4861 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Ccdc28bQ8CEG5 AC159813.1-201ENSMUST00000222671 2263 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Ccdc28bQ8CEG5 Gab3-202ENSMUST00000114104 1705 ntAPPRIS ALT2 TSL 5 BASIC10.47□□□□□ -0.73
Ccdc28bQ8CEG5 Npl-201ENSMUST00000041874 1735 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Ccdc28bQ8CEG5 Plod1-201ENSMUST00000019199 3243 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Ccdc28bQ8CEG5 Trim34a-201ENSMUST00000060315 2590 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Ccdc28bQ8CEG5 Adam1b-201ENSMUST00000079368 3338 ntAPPRIS P1 BASIC10.47□□□□□ -0.73
Ccdc28bQ8CEG5 Gm43135-201ENSMUST00000196442 3462 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Ccdc28bQ8CEG5 Arhgap36-201ENSMUST00000042444 2733 ntAPPRIS ALT2 TSL 5 BASIC10.47□□□□□ -0.73
Ccdc28bQ8CEG5 A630012P03Rik-202ENSMUST00000114854 1974 ntTSL 5 BASIC10.47□□□□□ -0.73
Ccdc28bQ8CEG5 Ciapin1-209ENSMUST00000162538 4359 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Ccdc28bQ8CEG5 Zfp317-205ENSMUST00000215372 2809 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Ccdc28bQ8CEG5 Mgme1-201ENSMUST00000028910 2840 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Ccdc28bQ8CEG5 Ttpal-207ENSMUST00000171696 4522 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Ccdc28bQ8CEG5 Gm26947-201ENSMUST00000182497 2929 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Ccdc28bQ8CEG5 Gm32856-201ENSMUST00000212145 3767 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Ccdc28bQ8CEG5 Atg9a-201ENSMUST00000040689 3764 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Ccdc28bQ8CEG5 Gm15198-201ENSMUST00000117283 177 ntBASIC10.47□□□□□ -0.73
Ccdc28bQ8CEG5 Gm16481-201ENSMUST00000119074 1227 ntBASIC10.47□□□□□ -0.73
Ccdc28bQ8CEG5 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC10.47□□□□□ -0.73
Ccdc28bQ8CEG5 Gm13328-201ENSMUST00000120816 1020 ntBASIC10.47□□□□□ -0.73
Ccdc28bQ8CEG5 Rpl9-ps7-201ENSMUST00000140507 579 ntBASIC10.47□□□□□ -0.73
Ccdc28bQ8CEG5 Gm53-203ENSMUST00000143887 757 ntTSL 3 BASIC10.47□□□□□ -0.73
Ccdc28bQ8CEG5 Gm7666-201ENSMUST00000146631 819 ntBASIC10.47□□□□□ -0.73
Ccdc28bQ8CEG5 AI854703-202ENSMUST00000154570 3806 ntAPPRIS P1 TSL 2 BASIC10.47□□□□□ -0.73
Ccdc28bQ8CEG5 Gm7584-201ENSMUST00000175829 940 ntBASIC10.47□□□□□ -0.73
Ccdc28bQ8CEG5 Gm44323-201ENSMUST00000198689 129 ntBASIC10.47□□□□□ -0.73
Ccdc28bQ8CEG5 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Ccdc28bQ8CEG5 5330413P13Rik-205ENSMUST00000210961 913 ntTSL 5 BASIC10.47□□□□□ -0.73
Ccdc28bQ8CEG5 Ddo-207ENSMUST00000216830 806 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Ccdc28bQ8CEG5 Med10-204ENSMUST00000221893 815 ntTSL 2 BASIC10.47□□□□□ -0.73
Ccdc28bQ8CEG5 Gm40983-201ENSMUST00000222524 502 ntTSL 3 BASIC10.47□□□□□ -0.73
Ccdc28bQ8CEG5 CT025679.1-201ENSMUST00000227106 449 ntBASIC10.47□□□□□ -0.73
Ccdc28bQ8CEG5 Rpl9-ps4-201ENSMUST00000075549 579 ntBASIC10.47□□□□□ -0.73
Retrieved 100 of 76,532 protein–RNA pairs in 45 ms