Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Szrd1-203ENSMUST00000102487 3244 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Usp40Q8BWR4 Eng-201ENSMUST00000009705 3422 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Usp40Q8BWR4 Camk2g-202ENSMUST00000080440 3604 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
Usp40Q8BWR4 Sema6d-206ENSMUST00000103239 6225 ntAPPRIS P4 TSL 5 BASIC14.54□□□□□ -0.08
Usp40Q8BWR4 Zfand1-202ENSMUST00000108377 936 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Usp40Q8BWR4 Zbp1-202ENSMUST00000109116 770 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Usp40Q8BWR4 Slc25a21-202ENSMUST00000110680 918 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Usp40Q8BWR4 Gm15264-201ENSMUST00000118050 502 ntBASIC14.54□□□□□ -0.08
Usp40Q8BWR4 Gm37851-201ENSMUST00000193871 889 ntBASIC14.54□□□□□ -0.08
Usp40Q8BWR4 Gm19090-201ENSMUST00000218187 774 ntBASIC14.54□□□□□ -0.08
Usp40Q8BWR4 Gm19605-205ENSMUST00000221712 677 ntTSL 3 BASIC14.54□□□□□ -0.08
Usp40Q8BWR4 Rhno1-207ENSMUST00000223237 1081 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
Usp40Q8BWR4 Gm8730-201ENSMUST00000076373 954 ntBASIC14.54□□□□□ -0.08
Usp40Q8BWR4 Mrpl24-202ENSMUST00000119968 1339 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Usp40Q8BWR4 Itpa-201ENSMUST00000103193 1390 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Usp40Q8BWR4 Pfkfb3-215ENSMUST00000183869 1478 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Usp40Q8BWR4 Agpat5-202ENSMUST00000149565 10779 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Usp40Q8BWR4 9430038I01Rik-203ENSMUST00000120340 4643 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Usp40Q8BWR4 Tmprss11c-201ENSMUST00000059424 1615 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Usp40Q8BWR4 Gm16429-202ENSMUST00000201400 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Usp40Q8BWR4 Serpina3g-201ENSMUST00000043315 1803 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Usp40Q8BWR4 Gm7971-201ENSMUST00000086950 1848 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Usp40Q8BWR4 Smarca5-ps-201ENSMUST00000121843 3123 ntBASIC14.54□□□□□ -0.08
Usp40Q8BWR4 Ablim1-213ENSMUST00000111559 3184 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Usp40Q8BWR4 Mamdc2-201ENSMUST00000036069 3338 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Usp40Q8BWR4 Limch1-204ENSMUST00000118242 5050 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Usp40Q8BWR4 Gm6211-201ENSMUST00000147973 4275 ntBASIC14.53□□□□□ -0.08
Usp40Q8BWR4 CT025678.1-201ENSMUST00000214795 2972 ntBASIC14.53□□□□□ -0.08
Usp40Q8BWR4 Stau2-216ENSMUST00000162627 2773 ntTSL 5 BASIC14.53□□□□□ -0.08
Usp40Q8BWR4 Ces4a-201ENSMUST00000161289 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Usp40Q8BWR4 Gm11571-201ENSMUST00000136820 2396 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Usp40Q8BWR4 Celf2-224ENSMUST00000182879 2223 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Usp40Q8BWR4 Mirg-201ENSMUST00000181496 1906 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Usp40Q8BWR4 AC130671.3-201ENSMUST00000227393 1897 ntBASIC14.53□□□□□ -0.08
Usp40Q8BWR4 Slc13a5-202ENSMUST00000137701 1746 ntTSL 5 BASIC14.53□□□□□ -0.08
Usp40Q8BWR4 Gm8752-201ENSMUST00000173427 1694 ntBASIC14.53□□□□□ -0.08
Usp40Q8BWR4 Etv1-205ENSMUST00000160856 1474 ntTSL 5 BASIC14.53□□□□□ -0.08
Usp40Q8BWR4 Furin-202ENSMUST00000120753 4332 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Usp40Q8BWR4 Cyb5b-201ENSMUST00000034400 4316 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Usp40Q8BWR4 Atxn2l-206ENSMUST00000206577 3894 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Usp40Q8BWR4 Gm17151-201ENSMUST00000105760 367 ntTSL 3 BASIC14.53□□□□□ -0.08
Usp40Q8BWR4 Gm14650-201ENSMUST00000120400 889 ntBASIC14.53□□□□□ -0.08
Usp40Q8BWR4 Gm23081-201ENSMUST00000157845 297 ntBASIC14.53□□□□□ -0.08
Usp40Q8BWR4 Gm5501-201ENSMUST00000165917 832 ntBASIC14.53□□□□□ -0.08
Usp40Q8BWR4 Gm25591-201ENSMUST00000177317 94 ntBASIC14.53□□□□□ -0.08
Usp40Q8BWR4 AC107711.3-201ENSMUST00000228939 1035 ntBASIC14.53□□□□□ -0.08
Usp40Q8BWR4 Lcn3-201ENSMUST00000028304 684 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Usp40Q8BWR4 Eif3m-201ENSMUST00000028592 1283 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Usp40Q8BWR4 Mt4-201ENSMUST00000034207 398 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Usp40Q8BWR4 Pif1-203ENSMUST00000134538 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Usp40Q8BWR4 4732491K20Rik-201ENSMUST00000181774 3142 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Usp40Q8BWR4 Prok1-202ENSMUST00000197758 3063 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Usp40Q8BWR4 Flad1-204ENSMUST00000129308 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Usp40Q8BWR4 Adarb1-204ENSMUST00000105406 6662 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Usp40Q8BWR4 B930092H01Rik-201ENSMUST00000213377 2678 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Usp40Q8BWR4 Gm29050-201ENSMUST00000190732 2528 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Usp40Q8BWR4 Odf2l-204ENSMUST00000106192 2425 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Usp40Q8BWR4 Madd-211ENSMUST00000111373 5641 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Usp40Q8BWR4 Mirt1-203ENSMUST00000181539 2259 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Usp40Q8BWR4 Gm42449-201ENSMUST00000200349 2258 ntBASIC14.53□□□□□ -0.08
Usp40Q8BWR4 Gm11497-201ENSMUST00000138295 2154 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Usp40Q8BWR4 Ltbp1-202ENSMUST00000112514 4870 ntAPPRIS ALT1 TSL 5 BASIC14.53□□□□□ -0.08
Usp40Q8BWR4 Pcdhga6-201ENSMUST00000195823 4733 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Usp40Q8BWR4 Atp1a2-202ENSMUST00000097464 3186 ntTSL 5 BASIC14.53□□□□□ -0.08
Usp40Q8BWR4 Gm20755-201ENSMUST00000196893 1827 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Usp40Q8BWR4 Kif1a-203ENSMUST00000171556 5391 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Usp40Q8BWR4 Asxl1-205ENSMUST00000227428 6981 ntAPPRIS ALT2 BASIC14.52□□□□□ -0.08
Usp40Q8BWR4 Gas7-202ENSMUST00000108680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Usp40Q8BWR4 Adprhl1-205ENSMUST00000204916 5228 ntTSL 5 BASIC14.52□□□□□ -0.08
Usp40Q8BWR4 Apba2-201ENSMUST00000032732 3321 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Usp40Q8BWR4 Krt75-201ENSMUST00000042957 3266 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Usp40Q8BWR4 Fhl1-202ENSMUST00000114768 1337 ntTSL 5 BASIC14.52□□□□□ -0.08
Usp40Q8BWR4 Gm39464-201ENSMUST00000214091 2169 ntTSL 5 BASIC14.52□□□□□ -0.08
Usp40Q8BWR4 Sox8-201ENSMUST00000025003 3000 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Usp40Q8BWR4 Stmn3-201ENSMUST00000103045 1136 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Usp40Q8BWR4 Gm6276-201ENSMUST00000120159 579 ntBASIC14.52□□□□□ -0.09
Usp40Q8BWR4 Gm13792-201ENSMUST00000121350 423 ntBASIC14.52□□□□□ -0.09
Usp40Q8BWR4 Gm6939-201ENSMUST00000122029 864 ntBASIC14.52□□□□□ -0.09
Usp40Q8BWR4 Polr1c-203ENSMUST00000124655 829 ntTSL 5 BASIC14.52□□□□□ -0.09
Usp40Q8BWR4 Gm16228-201ENSMUST00000162286 809 ntBASIC14.52□□□□□ -0.09
Usp40Q8BWR4 Gm4812-201ENSMUST00000182847 993 ntBASIC14.52□□□□□ -0.09
Usp40Q8BWR4 Gm8756-201ENSMUST00000183250 929 ntBASIC14.52□□□□□ -0.09
Usp40Q8BWR4 Gm37232-201ENSMUST00000194887 367 ntBASIC14.52□□□□□ -0.09
Usp40Q8BWR4 1700052H01Rik-201ENSMUST00000196142 717 ntTSL 3 BASIC14.52□□□□□ -0.09
Usp40Q8BWR4 Gm31678-201ENSMUST00000198262 454 ntTSL 3 BASIC14.52□□□□□ -0.09
Usp40Q8BWR4 Gm43726-201ENSMUST00000199110 775 ntBASIC14.52□□□□□ -0.09
Usp40Q8BWR4 Gm18164-201ENSMUST00000213769 927 ntBASIC14.52□□□□□ -0.09
Usp40Q8BWR4 Gm18166-201ENSMUST00000215557 927 ntBASIC14.52□□□□□ -0.09
Usp40Q8BWR4 Gm18596-201ENSMUST00000218133 843 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
Usp40Q8BWR4 Olfr1335-202ENSMUST00000219094 1148 ntAPPRIS P2 BASIC14.52□□□□□ -0.09
Usp40Q8BWR4 AC165260.2-201ENSMUST00000225371 395 ntBASIC14.52□□□□□ -0.09
Usp40Q8BWR4 Olfr1335-201ENSMUST00000084313 1148 ntAPPRIS ALT2 BASIC14.52□□□□□ -0.09
Usp40Q8BWR4 Olfr169-201ENSMUST00000090062 942 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
Usp40Q8BWR4 Nr5a1-201ENSMUST00000028084 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Usp40Q8BWR4 Toe1-201ENSMUST00000030451 2090 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Usp40Q8BWR4 Hr-205ENSMUST00000163060 5278 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
Usp40Q8BWR4 Vmn1r45-207ENSMUST00000228492 2849 ntBASIC14.52□□□□□ -0.09
Usp40Q8BWR4 Slc25a51-201ENSMUST00000107796 4433 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Usp40Q8BWR4 Rhbdf2-202ENSMUST00000103029 3593 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Usp40Q8BWR4 Gpr39-201ENSMUST00000027581 2691 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 337.1 ms