Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Nos3-202ENSMUST00000115090 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
Clrn1Q8K445 Dctn1-203ENSMUST00000113913 4163 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Clrn1Q8K445 Gm6158-201ENSMUST00000109467 904 ntBASIC10.05□□□□□ -0.8
Clrn1Q8K445 Srpk1-202ENSMUST00000114767 445 ntTSL 3 BASIC10.05□□□□□ -0.8
Clrn1Q8K445 Gm13668-201ENSMUST00000119237 1001 ntBASIC10.05□□□□□ -0.8
Clrn1Q8K445 Pcnp-203ENSMUST00000119981 901 ntTSL 3 BASIC10.05□□□□□ -0.8
Clrn1Q8K445 Myl3-202ENSMUST00000124267 575 ntAPPRIS ALT2 TSL 5 BASIC10.05□□□□□ -0.8
Clrn1Q8K445 Nop16-202ENSMUST00000148222 790 ntTSL 5 BASIC10.05□□□□□ -0.8
Clrn1Q8K445 Gm26982-201ENSMUST00000182250 1151 ntBASIC10.05□□□□□ -0.8
Clrn1Q8K445 Gm8492-201ENSMUST00000182375 987 ntBASIC10.05□□□□□ -0.8
Clrn1Q8K445 Gm4812-201ENSMUST00000182847 993 ntBASIC10.05□□□□□ -0.8
Clrn1Q8K445 Tcstv1-202ENSMUST00000190512 875 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Clrn1Q8K445 Gm35584-201ENSMUST00000191767 641 ntTSL 5 BASIC10.05□□□□□ -0.8
Clrn1Q8K445 Gm42833-201ENSMUST00000196019 2124 ntBASIC10.05□□□□□ -0.8
Clrn1Q8K445 Gm15469-201ENSMUST00000201750 961 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Clrn1Q8K445 Gm7600-201ENSMUST00000209657 785 ntBASIC10.05□□□□□ -0.8
Clrn1Q8K445 Gm18035-201ENSMUST00000211962 589 ntBASIC10.05□□□□□ -0.8
Clrn1Q8K445 AC120394.2-201ENSMUST00000213905 702 ntTSL 5 BASIC10.05□□□□□ -0.8
Clrn1Q8K445 Gm11149-203ENSMUST00000215465 805 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Clrn1Q8K445 Ap3s1-202ENSMUST00000224622 978 ntBASIC10.05□□□□□ -0.8
Clrn1Q8K445 AC124581.2-201ENSMUST00000225459 282 ntBASIC10.05□□□□□ -0.8
Clrn1Q8K445 Spata46-201ENSMUST00000056991 771 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Clrn1Q8K445 Ubap2l-215ENSMUST00000198322 3385 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Clrn1Q8K445 Gm42521-201ENSMUST00000199190 2040 ntBASIC10.05□□□□□ -0.8
Clrn1Q8K445 Gm15651-201ENSMUST00000159953 2507 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Clrn1Q8K445 Lin54-209ENSMUST00000152387 2760 ntTSL 5 BASIC10.05□□□□□ -0.8
Clrn1Q8K445 Gm45124-201ENSMUST00000206723 2755 ntBASIC10.05□□□□□ -0.8
Clrn1Q8K445 Lrrk1-201ENSMUST00000015277 7465 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Clrn1Q8K445 Rep15-201ENSMUST00000036194 1662 ntAPPRIS P1 BASIC10.05□□□□□ -0.8
Clrn1Q8K445 Olfr272-202ENSMUST00000107667 1936 ntAPPRIS P1 TSL 3 BASIC10.05□□□□□ -0.8
Clrn1Q8K445 Gtf2i-222ENSMUST00000174354 4084 ntAPPRIS ALT2 TSL 2 BASIC10.05□□□□□ -0.8
Clrn1Q8K445 AC129336.2-201ENSMUST00000218053 3086 ntBASIC10.05□□□□□ -0.8
Clrn1Q8K445 Cap2-202ENSMUST00000119341 2454 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Clrn1Q8K445 Zfp92-201ENSMUST00000033740 5767 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Clrn1Q8K445 Adgra1-201ENSMUST00000026548 4758 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Clrn1Q8K445 Edn1-201ENSMUST00000021796 2139 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Clrn1Q8K445 Prdm16-205ENSMUST00000105637 8595 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Clrn1Q8K445 Prdm16-201ENSMUST00000030902 8598 ntAPPRIS P3 TSL 1 (best) BASIC10.04□□□□□ -0.8
Clrn1Q8K445 Plscr3-203ENSMUST00000108633 2785 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Clrn1Q8K445 2410004P03Rik-201ENSMUST00000095823 3437 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Clrn1Q8K445 Gtf3c6-206ENSMUST00000217537 2526 ntAPPRIS P2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Clrn1Q8K445 Ncmap-203ENSMUST00000105858 1616 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Clrn1Q8K445 Cdc20b-203ENSMUST00000181117 1608 ntAPPRIS ALT2 TSL 5 BASIC10.04□□□□□ -0.8
Clrn1Q8K445 Atxn7l3-203ENSMUST00000107134 3712 ntAPPRIS ALT1 TSL 5 BASIC10.04□□□□□ -0.8
Clrn1Q8K445 Mknk2-201ENSMUST00000003433 3065 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Clrn1Q8K445 Slc37a4-202ENSMUST00000213268 1353 ntAPPRIS ALT1 TSL 5 BASIC10.04□□□□□ -0.8
Clrn1Q8K445 Gm38115-201ENSMUST00000194317 2413 ntTSL 5 BASIC10.04□□□□□ -0.8
Clrn1Q8K445 Pcdh15-207ENSMUST00000124046 5336 ntTSL 5 BASIC10.04□□□□□ -0.8
Clrn1Q8K445 Gm7742-201ENSMUST00000167648 1527 ntBASIC10.04□□□□□ -0.8
Clrn1Q8K445 Gm7732-201ENSMUST00000170486 1527 ntBASIC10.04□□□□□ -0.8
Clrn1Q8K445 Gm7740-201ENSMUST00000186171 1527 ntBASIC10.04□□□□□ -0.8
Clrn1Q8K445 4930566F21Rik-201ENSMUST00000201177 1535 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Clrn1Q8K445 Gm7736-201ENSMUST00000096981 1527 ntBASIC10.04□□□□□ -0.8
Clrn1Q8K445 Prnd-201ENSMUST00000110169 1918 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Clrn1Q8K445 Hyal1-202ENSMUST00000112387 2706 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Clrn1Q8K445 Apbb1-217ENSMUST00000191011 2712 ntAPPRIS ALT1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Clrn1Q8K445 AI854703-201ENSMUST00000095938 3517 ntAPPRIS P1 TSL 2 BASIC10.04□□□□□ -0.8
Clrn1Q8K445 Irf9-202ENSMUST00000130697 2459 ntAPPRIS P3 TSL 1 (best) BASIC10.04□□□□□ -0.8
Clrn1Q8K445 Crygc-202ENSMUST00000114064 612 ntAPPRIS ALT1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Clrn1Q8K445 4930412O13Rik-202ENSMUST00000114919 558 ntAPPRIS ALT2 TSL 2 BASIC10.04□□□□□ -0.8
Clrn1Q8K445 Snx29-202ENSMUST00000115814 1125 ntTSL 5 BASIC10.04□□□□□ -0.8
Clrn1Q8K445 Gm13351-201ENSMUST00000118087 414 ntBASIC10.04□□□□□ -0.8
Clrn1Q8K445 Gm12337-201ENSMUST00000119634 400 ntBASIC10.04□□□□□ -0.8
Clrn1Q8K445 Gm13530-201ENSMUST00000134014 390 ntTSL 2 BASIC10.04□□□□□ -0.8
Clrn1Q8K445 Treml4-203ENSMUST00000136272 811 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Clrn1Q8K445 Treml4-206ENSMUST00000154335 838 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Clrn1Q8K445 Gm17019-201ENSMUST00000167908 1162 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Clrn1Q8K445 Pax5-212ENSMUST00000173733 885 ntTSL 5 BASIC10.04□□□□□ -0.8
Clrn1Q8K445 Gm16894-201ENSMUST00000181756 842 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Clrn1Q8K445 Gm27438-201ENSMUST00000183480 110 ntBASIC10.04□□□□□ -0.8
Clrn1Q8K445 Gm20781-201ENSMUST00000193154 693 ntBASIC10.04□□□□□ -0.8
Clrn1Q8K445 Gm21736-201ENSMUST00000195399 693 ntBASIC10.04□□□□□ -0.8
Clrn1Q8K445 D5Ertd615e-203ENSMUST00000198493 1032 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Clrn1Q8K445 Gm5881-201ENSMUST00000204737 367 ntBASIC10.04□□□□□ -0.8
Clrn1Q8K445 Gm36028-202ENSMUST00000205931 1161 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
Clrn1Q8K445 Klk1b15-ps-201ENSMUST00000206273 715 ntBASIC10.04□□□□□ -0.8
Clrn1Q8K445 Gm31409-201ENSMUST00000209894 710 ntTSL 5 BASIC10.04□□□□□ -0.8
Clrn1Q8K445 AC102847.1-202ENSMUST00000226313 1245 ntBASIC10.04□□□□□ -0.8
Clrn1Q8K445 Rnf181-202ENSMUST00000069595 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Clrn1Q8K445 Gm7536-201ENSMUST00000077389 444 ntBASIC10.04□□□□□ -0.8
Clrn1Q8K445 Med17-201ENSMUST00000034411 3964 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Clrn1Q8K445 Zc3h12a-201ENSMUST00000036188 2755 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Clrn1Q8K445 Olfr55-202ENSMUST00000214888 4675 ntTSL 5 BASIC10.04□□□□□ -0.8
Clrn1Q8K445 Gm12097-201ENSMUST00000121523 1414 ntBASIC10.04□□□□□ -0.8
Clrn1Q8K445 Gm19040-201ENSMUST00000203280 4726 ntBASIC10.04□□□□□ -0.8
Clrn1Q8K445 Smim1-214ENSMUST00000182191 3535 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Clrn1Q8K445 Gpr155-204ENSMUST00000112044 4201 ntAPPRIS ALT2 TSL 5 BASIC10.04□□□□□ -0.8
Clrn1Q8K445 Gm42941-201ENSMUST00000200347 1321 ntBASIC10.04□□□□□ -0.8
Clrn1Q8K445 4932431P20Rik-201ENSMUST00000098602 1340 ntBASIC10.04□□□□□ -0.8
Clrn1Q8K445 Ets2-201ENSMUST00000023612 3890 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Clrn1Q8K445 Mms19-201ENSMUST00000026168 3162 ntAPPRIS ALT2 TSL 5 BASIC10.04□□□□□ -0.8
Clrn1Q8K445 Peg10-203ENSMUST00000176551 6567 ntTSL 2 BASIC10.04□□□□□ -0.8
Clrn1Q8K445 Nrf1-208ENSMUST00000115208 2492 ntTSL 5 BASIC10.04□□□□□ -0.8
Clrn1Q8K445 Gm38357-201ENSMUST00000195382 2464 ntBASIC10.04□□□□□ -0.8
Clrn1Q8K445 Calhm2-201ENSMUST00000035822 2458 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Clrn1Q8K445 Prdm16-203ENSMUST00000097759 8544 ntAPPRIS ALT2 TSL 5 BASIC10.03□□□□□ -0.8
Clrn1Q8K445 Atad5-201ENSMUST00000017694 7272 ntAPPRIS P2 TSL 1 (best) BASIC10.03□□□□□ -0.8
Clrn1Q8K445 Gm15984-202ENSMUST00000156466 1534 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Clrn1Q8K445 Lrp2bp-201ENSMUST00000066451 1525 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Clrn1Q8K445 Kcne2-201ENSMUST00000047383 1690 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Retrieved 100 of 76,532 protein–RNA pairs in 87.8 ms