Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Ncoa2-201ENSMUST00000006037 4897 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Rfx1P48377 Gm26625-201ENSMUST00000181519 2538 ntTSL 5 BASIC12.68□□□□□ -0.38
Rfx1P48377 Acnat2-202ENSMUST00000107698 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Rfx1P48377 Npnt-205ENSMUST00000117456 3383 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Rfx1P48377 Gm26670-201ENSMUST00000180429 3287 ntBASIC12.68□□□□□ -0.38
Rfx1P48377 Cacna1f-201ENSMUST00000115725 6028 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Rfx1P48377 4933422A05Rik-201ENSMUST00000213706 1356 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Rfx1P48377 Timm9-208ENSMUST00000221797 2564 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Rfx1P48377 Dchs1-201ENSMUST00000078482 10754 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Rfx1P48377 Slc1a4-202ENSMUST00000109594 3926 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Rfx1P48377 Bcl2l1-206ENSMUST00000140436 1865 ntTSL 2 BASIC12.68□□□□□ -0.38
Rfx1P48377 Gm498-202ENSMUST00000152910 1507 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Rfx1P48377 Bet1-201ENSMUST00000049166 1516 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Rfx1P48377 Nhsl1-202ENSMUST00000100054 6795 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Rfx1P48377 Svil-204ENSMUST00000127297 6243 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Rfx1P48377 Gm37909-201ENSMUST00000193157 2159 ntBASIC12.67□□□□□ -0.38
Rfx1P48377 Tnfrsf9-204ENSMUST00000105672 1999 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Rfx1P48377 Gm6268-201ENSMUST00000115253 1453 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Rfx1P48377 Epb41l5-202ENSMUST00000052404 6442 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Rfx1P48377 Fam122b-201ENSMUST00000071023 4334 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Rfx1P48377 Mut-201ENSMUST00000169611 3675 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Rfx1P48377 Rnh1-201ENSMUST00000106033 2091 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Rfx1P48377 Gm25076-201ENSMUST00000104098 132 ntBASIC12.67□□□□□ -0.38
Rfx1P48377 Gm12217-201ENSMUST00000118858 696 ntBASIC12.67□□□□□ -0.38
Rfx1P48377 Gm3828-201ENSMUST00000121817 257 ntBASIC12.67□□□□□ -0.38
Rfx1P48377 Smim6-201ENSMUST00000132961 978 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Rfx1P48377 Zdhhc4-208ENSMUST00000161915 1216 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Rfx1P48377 AU015836-205ENSMUST00000163458 911 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Rfx1P48377 Ly6g6c-201ENSMUST00000173207 598 ntAPPRIS ALT2 TSL 3 BASIC12.67□□□□□ -0.38
Rfx1P48377 Ly6g6c-202ENSMUST00000173478 962 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Rfx1P48377 Smlr1-201ENSMUST00000179685 669 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Rfx1P48377 Gm29331-201ENSMUST00000187215 605 ntTSL 5 BASIC12.67□□□□□ -0.38
Rfx1P48377 Gm7047-201ENSMUST00000196224 1063 ntBASIC12.67□□□□□ -0.38
Rfx1P48377 Gm45398-201ENSMUST00000210561 165 ntBASIC12.67□□□□□ -0.38
Rfx1P48377 Thyn1-202ENSMUST00000213683 1107 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Rfx1P48377 1700027J07Rik-202ENSMUST00000215747 1060 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Rfx1P48377 AC167364.1-201ENSMUST00000221495 784 ntTSL 5 BASIC12.67□□□□□ -0.38
Rfx1P48377 AC114573.1-201ENSMUST00000224120 1210 ntBASIC12.67□□□□□ -0.38
Rfx1P48377 CT025618.1-203ENSMUST00000227008 589 ntBASIC12.67□□□□□ -0.38
Rfx1P48377 CT025679.1-201ENSMUST00000227106 449 ntBASIC12.67□□□□□ -0.38
Rfx1P48377 BX649293.1-201ENSMUST00000227437 631 ntBASIC12.67□□□□□ -0.38
Rfx1P48377 Mrps11-201ENSMUST00000032840 1056 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Rfx1P48377 Fkbpl-201ENSMUST00000036720 1270 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Rfx1P48377 Ly6g5c-201ENSMUST00000037849 509 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Rfx1P48377 Dnajc17-201ENSMUST00000038439 1008 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Rfx1P48377 Fam151b-201ENSMUST00000040106 1152 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Rfx1P48377 Olfr414-201ENSMUST00000053178 955 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
Rfx1P48377 Aamdc-202ENSMUST00000072725 776 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Rfx1P48377 Gm10775-201ENSMUST00000099425 1203 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Rfx1P48377 St3gal6-207ENSMUST00000137035 4123 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Rfx1P48377 Spata48-201ENSMUST00000020410 1430 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Rfx1P48377 Rpl18-207ENSMUST00000210640 2989 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Rfx1P48377 Parp3-201ENSMUST00000067218 2962 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Rfx1P48377 Ccdc32-201ENSMUST00000036470 1870 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Rfx1P48377 Lmo7-205ENSMUST00000159314 5774 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Rfx1P48377 Spata16-201ENSMUST00000047005 2022 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Rfx1P48377 Miga2-202ENSMUST00000100214 3586 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Rfx1P48377 Loxl4-201ENSMUST00000026190 3738 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Rfx1P48377 Tubb5-201ENSMUST00000001566 2649 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Rfx1P48377 Pde4b-206ENSMUST00000106907 1374 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Rfx1P48377 Lrrc57-201ENSMUST00000102496 1848 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Rfx1P48377 Pde9a-206ENSMUST00000134525 1818 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Rfx1P48377 Gm16429-202ENSMUST00000201400 1848 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Rfx1P48377 Gm7971-201ENSMUST00000086950 1848 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Rfx1P48377 Tnfrsf9-205ENSMUST00000116257 2115 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Rfx1P48377 Cage1-203ENSMUST00000110233 2875 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Rfx1P48377 6430573F11Rik-203ENSMUST00000147525 5820 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Rfx1P48377 Syk-202ENSMUST00000118756 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Rfx1P48377 Gm30074-201ENSMUST00000193192 2541 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Rfx1P48377 AC117648.1-201ENSMUST00000219777 2510 ntBASIC12.66□□□□□ -0.38
Rfx1P48377 Pax6-204ENSMUST00000111083 2370 ntAPPRIS ALT1 TSL 5 BASIC12.66□□□□□ -0.38
Rfx1P48377 Hcar2-201ENSMUST00000057145 1930 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
Rfx1P48377 2310002L09Rik-202ENSMUST00000095023 1929 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Rfx1P48377 Anxa9-204ENSMUST00000164406 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Rfx1P48377 B4galt4-204ENSMUST00000114711 1481 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Rfx1P48377 Padi3-201ENSMUST00000026377 3072 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Rfx1P48377 Sass6-204ENSMUST00000197335 2458 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Rfx1P48377 Shcbp1-201ENSMUST00000022945 2156 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Rfx1P48377 Slc17a8-202ENSMUST00000105295 1863 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Rfx1P48377 Gtf2i-223ENSMUST00000174513 4021 ntAPPRIS ALT2 TSL 2 BASIC12.66□□□□□ -0.38
Rfx1P48377 Gm38312-201ENSMUST00000195426 1746 ntBASIC12.66□□□□□ -0.38
Rfx1P48377 Ceacam1-205ENSMUST00000206171 1722 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Rfx1P48377 Slco5a1-205ENSMUST00000146763 3437 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Rfx1P48377 Gm16518-201ENSMUST00000117960 508 ntBASIC12.66□□□□□ -0.38
Rfx1P48377 Gm15573-201ENSMUST00000119487 540 ntBASIC12.66□□□□□ -0.38
Rfx1P48377 Tnfrsf14-201ENSMUST00000123514 1018 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Rfx1P48377 Gm11210-201ENSMUST00000150203 422 ntTSL 3 BASIC12.66□□□□□ -0.38
Rfx1P48377 Cldn16-202ENSMUST00000161053 1173 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Rfx1P48377 Gm20441-201ENSMUST00000173512 756 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Rfx1P48377 Mir6927-201ENSMUST00000184494 71 ntBASIC12.66□□□□□ -0.38
Rfx1P48377 1700029J03Rik-201ENSMUST00000185803 789 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Rfx1P48377 Creb1-209ENSMUST00000190348 1260 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Rfx1P48377 4930413E15Rik-201ENSMUST00000202500 1290 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Rfx1P48377 Myoz2-201ENSMUST00000029761 1181 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Rfx1P48377 Nudt7-201ENSMUST00000066514 935 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Rfx1P48377 Orc4-202ENSMUST00000090976 1153 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Rfx1P48377 Ctxn2-201ENSMUST00000099452 1028 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Rfx1P48377 Mllt3-201ENSMUST00000078090 6069 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Rfx1P48377 Sqor-202ENSMUST00000110506 1985 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Rfx1P48377 Gm30648-202ENSMUST00000200648 1957 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 53.8 ms