Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Wif1-203ENSMUST00000175867 2183 ntTSL 5 BASIC11.98□□□□□ -0.49
Smc1aQ9CU62 Gsdmc2-202ENSMUST00000188404 2078 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Smc1aQ9CU62 Gpr35-202ENSMUST00000064480 3409 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Smc1aQ9CU62 Trem1-201ENSMUST00000048782 2993 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Smc1aQ9CU62 Rab2b-201ENSMUST00000022765 2906 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Smc1aQ9CU62 Ppp2r2a-201ENSMUST00000089230 4010 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Smc1aQ9CU62 Ogfod1-202ENSMUST00000093301 5141 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Smc1aQ9CU62 4933409D19Rik-201ENSMUST00000193674 1557 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Smc1aQ9CU62 E2f8-201ENSMUST00000058745 3691 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Smc1aQ9CU62 Gm44888-201ENSMUST00000209119 2541 ntBASIC11.97□□□□□ -0.49
Smc1aQ9CU62 Scnn1b-201ENSMUST00000033161 2478 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Smc1aQ9CU62 Gm5641-201ENSMUST00000091130 1488 ntBASIC11.97□□□□□ -0.49
Smc1aQ9CU62 Dpf2-202ENSMUST00000118623 2406 ntTSL 5 BASIC11.97□□□□□ -0.49
Smc1aQ9CU62 C530005A16Rik-201ENSMUST00000142815 2436 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Smc1aQ9CU62 Tspear-201ENSMUST00000092366 2446 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Smc1aQ9CU62 Gm14820-201ENSMUST00000126286 1449 ntTSL 3 BASIC11.97□□□□□ -0.49
Smc1aQ9CU62 Lta-201ENSMUST00000025266 1383 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Smc1aQ9CU62 Kirrel3-201ENSMUST00000045091 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Smc1aQ9CU62 Wbp1l-204ENSMUST00000138302 3900 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
Smc1aQ9CU62 Atp6v1g2-202ENSMUST00000118384 483 ntTSL 2 BASIC11.97□□□□□ -0.49
Smc1aQ9CU62 Gm11578-201ENSMUST00000118530 459 ntBASIC11.97□□□□□ -0.49
Smc1aQ9CU62 Fhit-204ENSMUST00000161302 860 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Smc1aQ9CU62 Gm20822-201ENSMUST00000165756 687 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
Smc1aQ9CU62 Gm20828-201ENSMUST00000170889 687 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
Smc1aQ9CU62 Gm24809-201ENSMUST00000175318 271 ntBASIC11.97□□□□□ -0.49
Smc1aQ9CU62 Gm7719-201ENSMUST00000182374 975 ntBASIC11.97□□□□□ -0.49
Smc1aQ9CU62 Gapdh-ps14-201ENSMUST00000183246 1002 ntBASIC11.97□□□□□ -0.49
Smc1aQ9CU62 Nmbr-206ENSMUST00000190114 662 ntTSL 3 BASIC11.97□□□□□ -0.49
Smc1aQ9CU62 Gm5870-201ENSMUST00000196461 282 ntBASIC11.97□□□□□ -0.49
Smc1aQ9CU62 Chn2-210ENSMUST00000203091 755 ntTSL 5 BASIC11.97□□□□□ -0.49
Smc1aQ9CU62 Gm44216-201ENSMUST00000203942 157 ntBASIC11.97□□□□□ -0.49
Smc1aQ9CU62 1600002K03Rik-201ENSMUST00000041882 678 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Smc1aQ9CU62 Stra6-213ENSMUST00000167479 2871 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Smc1aQ9CU62 Vwa5b1-201ENSMUST00000030533 7486 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Smc1aQ9CU62 Gpr155-204ENSMUST00000112044 4201 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Smc1aQ9CU62 Dysf-211ENSMUST00000168387 6501 ntTSL 5 BASIC11.97□□□□□ -0.49
Smc1aQ9CU62 Slc38a5-203ENSMUST00000115591 1853 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Smc1aQ9CU62 Specc1-214ENSMUST00000202389 3363 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Smc1aQ9CU62 Gtf3c2-201ENSMUST00000088010 4552 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Smc1aQ9CU62 Synpo2l-203ENSMUST00000119483 3696 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Smc1aQ9CU62 Gm15983-201ENSMUST00000140000 4814 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Smc1aQ9CU62 Rad18-204ENSMUST00000113182 2220 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.49
Smc1aQ9CU62 Lexm-202ENSMUST00000106788 1569 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Smc1aQ9CU62 Tsix-202ENSMUST00000211291 3263 ntTSL 5 BASIC11.96□□□□□ -0.49
Smc1aQ9CU62 Gm11470-201ENSMUST00000118868 1475 ntBASIC11.96□□□□□ -0.49
Smc1aQ9CU62 Hsd17b6-203ENSMUST00000219447 1459 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Smc1aQ9CU62 Ncf2-201ENSMUST00000027754 2596 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Smc1aQ9CU62 Arih1-202ENSMUST00000165322 1431 ntTSL 5 BASIC11.96□□□□□ -0.49
Smc1aQ9CU62 Znrf1-202ENSMUST00000166859 3650 ntTSL 5 BASIC11.96□□□□□ -0.49
Smc1aQ9CU62 Son-204ENSMUST00000119368 7529 ntTSL 5 BASIC11.96□□□□□ -0.49
Smc1aQ9CU62 Patz1-207ENSMUST00000134089 1904 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Smc1aQ9CU62 5830437K03Rik-201ENSMUST00000199219 1379 ntBASIC11.96□□□□□ -0.49
Smc1aQ9CU62 Kmt2a-202ENSMUST00000114689 16470 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.49
Smc1aQ9CU62 Rgs6-207ENSMUST00000186323 1308 ntTSL 5 BASIC11.96□□□□□ -0.49
Smc1aQ9CU62 Gm43307-201ENSMUST00000199465 2371 ntBASIC11.96□□□□□ -0.49
Smc1aQ9CU62 Ss18l2-206ENSMUST00000215966 2316 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Smc1aQ9CU62 Rpl35a-205ENSMUST00000115079 510 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.49
Smc1aQ9CU62 Gm11619-201ENSMUST00000117474 237 ntBASIC11.96□□□□□ -0.49
Smc1aQ9CU62 Gm15528-201ENSMUST00000117821 864 ntBASIC11.96□□□□□ -0.49
Smc1aQ9CU62 Gm14213-201ENSMUST00000119778 768 ntBASIC11.96□□□□□ -0.49
Smc1aQ9CU62 Anxa8-202ENSMUST00000120077 1208 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Smc1aQ9CU62 E130307A14Rik-204ENSMUST00000139356 701 ntTSL 3 BASIC11.96□□□□□ -0.49
Smc1aQ9CU62 Prr33-202ENSMUST00000151580 399 ntTSL 5 BASIC11.96□□□□□ -0.49
Smc1aQ9CU62 Gm21778-201ENSMUST00000178779 471 ntBASIC11.96□□□□□ -0.49
Smc1aQ9CU62 Gm29164-201ENSMUST00000185454 1024 ntBASIC11.96□□□□□ -0.49
Smc1aQ9CU62 Mrpl30-207ENSMUST00000195373 587 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.49
Smc1aQ9CU62 1700017M07Rik-201ENSMUST00000198307 940 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Smc1aQ9CU62 Gm45613-201ENSMUST00000210718 443 ntTSL 3 BASIC11.96□□□□□ -0.49
Smc1aQ9CU62 Nt5dc1-206ENSMUST00000213269 802 ntTSL 5 BASIC11.96□□□□□ -0.49
Smc1aQ9CU62 Gm18499-201ENSMUST00000220808 1021 ntBASIC11.96□□□□□ -0.49
Smc1aQ9CU62 AC154305.2-201ENSMUST00000225813 901 ntBASIC11.96□□□□□ -0.49
Smc1aQ9CU62 Nme6-201ENSMUST00000035053 1074 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Smc1aQ9CU62 Taar7f-201ENSMUST00000071691 1077 ntAPPRIS P1 BASIC11.96□□□□□ -0.49
Smc1aQ9CU62 Vmn1r44-201ENSMUST00000089420 1108 ntAPPRIS P1 BASIC11.96□□□□□ -0.49
Smc1aQ9CU62 Taar7d-201ENSMUST00000092657 1077 ntAPPRIS P1 BASIC11.96□□□□□ -0.49
Smc1aQ9CU62 Tro-201ENSMUST00000087253 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Smc1aQ9CU62 Gm44103-201ENSMUST00000204364 3662 ntBASIC11.96□□□□□ -0.5
Smc1aQ9CU62 Magt1-204ENSMUST00000151689 4531 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Smc1aQ9CU62 Frmpd3-203ENSMUST00000208130 7314 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.5
Smc1aQ9CU62 Dync1i2-208ENSMUST00000112144 2565 ntAPPRIS ALT1 TSL 5 BASIC11.96□□□□□ -0.5
Smc1aQ9CU62 Pgf-201ENSMUST00000004913 1582 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Smc1aQ9CU62 Gm3294-201ENSMUST00000164104 7367 ntTSL 3 BASIC11.96□□□□□ -0.5
Smc1aQ9CU62 8030423F21Rik-201ENSMUST00000064097 2851 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Smc1aQ9CU62 Stk17b-201ENSMUST00000027263 3293 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Smc1aQ9CU62 Pax6-204ENSMUST00000111083 2370 ntAPPRIS ALT1 TSL 5 BASIC11.96□□□□□ -0.5
Smc1aQ9CU62 Hmgcll1-205ENSMUST00000183425 3239 ntTSL 5 BASIC11.96□□□□□ -0.5
Smc1aQ9CU62 Slc10a3-203ENSMUST00000114146 1902 ntAPPRIS P2 TSL 5 BASIC11.96□□□□□ -0.5
Smc1aQ9CU62 Gm3755-201ENSMUST00000169555 1462 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Smc1aQ9CU62 Ccdc90b-202ENSMUST00000085017 1494 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Smc1aQ9CU62 Adgrl3-215ENSMUST00000120673 5178 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
Smc1aQ9CU62 Ccdc62-202ENSMUST00000165148 3920 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Smc1aQ9CU62 Gria1-201ENSMUST00000036315 5546 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Smc1aQ9CU62 Fbxo15-201ENSMUST00000037718 1437 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Smc1aQ9CU62 Hyal3-201ENSMUST00000040059 1830 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Smc1aQ9CU62 Ampd2-201ENSMUST00000078912 3368 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
Smc1aQ9CU62 Lpo-201ENSMUST00000103177 2926 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Smc1aQ9CU62 Fam198b-202ENSMUST00000118853 6729 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Smc1aQ9CU62 Hmg20a-205ENSMUST00000215269 1700 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Smc1aQ9CU62 Mlxipl-201ENSMUST00000005507 3622 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Smc1aQ9CU62 Slc38a3-203ENSMUST00000177567 2456 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 43.2 ms