Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Wars-201ENSMUST00000109848 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cux1P53564 Slc38a5-202ENSMUST00000115590 1983 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
Cux1P53564 Ifna5-201ENSMUST00000102804 570 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Cux1P53564 Gm12733-201ENSMUST00000119871 767 ntBASIC16.19■□□□□ 0.18
Cux1P53564 AC134439.3-201ENSMUST00000223486 851 ntTSL 5 BASIC16.19■□□□□ 0.18
Cux1P53564 Taar1-201ENSMUST00000051532 1114 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Cux1P53564 Ccdc97-201ENSMUST00000002683 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cux1P53564 Slc17a3-203ENSMUST00000110422 1764 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Cux1P53564 Sept9-203ENSMUST00000100193 2924 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cux1P53564 Zbtb33-201ENSMUST00000049740 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cux1P53564 Fut8-202ENSMUST00000171770 2765 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cux1P53564 Sh3bp4-201ENSMUST00000066279 4995 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cux1P53564 Wdr20rt-202ENSMUST00000221658 1570 ntTSL 5 BASIC16.18■□□□□ 0.18
Cux1P53564 Gm36940-201ENSMUST00000194281 2036 ntBASIC16.18■□□□□ 0.18
Cux1P53564 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
Cux1P53564 Gm11571-201ENSMUST00000136820 2396 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Cux1P53564 Cyp1b1-201ENSMUST00000024894 5128 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cux1P53564 Chil1-207ENSMUST00000153856 1839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cux1P53564 Stx11-202ENSMUST00000163425 4032 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cux1P53564 Synpo2l-202ENSMUST00000117386 3979 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cux1P53564 Anapc15-203ENSMUST00000098237 1328 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Cux1P53564 Mkrn2os-202ENSMUST00000112957 964 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
Cux1P53564 Rhox3f-201ENSMUST00000115172 833 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cux1P53564 Gm11573-201ENSMUST00000119956 394 ntBASIC16.18■□□□□ 0.18
Cux1P53564 Gm13861-201ENSMUST00000137136 495 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Cux1P53564 Gm24352-201ENSMUST00000158966 125 ntBASIC16.18■□□□□ 0.18
Cux1P53564 Gm26913-201ENSMUST00000182391 732 ntBASIC16.18■□□□□ 0.18
Cux1P53564 Rhox3f-203ENSMUST00000184451 1008 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Cux1P53564 Pttg1-201ENSMUST00000020685 634 ntTSL 2 BASIC16.18■□□□□ 0.18
Cux1P53564 Olfr209-202ENSMUST00000208246 428 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Cux1P53564 Cryab-206ENSMUST00000217475 1117 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cux1P53564 Gm34868-201ENSMUST00000218341 530 ntTSL 3 BASIC16.18■□□□□ 0.18
Cux1P53564 8030423J24Rik-201ENSMUST00000022091 869 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cux1P53564 Gm33016-201ENSMUST00000221224 677 ntTSL 3 BASIC16.18■□□□□ 0.18
Cux1P53564 Mroh1-204ENSMUST00000159218 5085 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Cux1P53564 Adamts16-202ENSMUST00000109694 3378 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Cux1P53564 P4ha1-203ENSMUST00000105466 2918 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cux1P53564 Hvcn1-202ENSMUST00000100747 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cux1P53564 Ces1a-201ENSMUST00000095211 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cux1P53564 Sh2d5-201ENSMUST00000105823 3529 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cux1P53564 Arid4a-201ENSMUST00000046305 4998 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Cux1P53564 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC16.17■□□□□ 0.18
Cux1P53564 Ddx42-201ENSMUST00000021046 4011 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Cux1P53564 Tph1-202ENSMUST00000107669 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Cux1P53564 Chmp1b-202ENSMUST00000210564 2490 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Cux1P53564 Gm3532-201ENSMUST00000181880 1396 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Cux1P53564 Nrp2-203ENSMUST00000075144 6723 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Cux1P53564 5830473C10Rik-202ENSMUST00000200765 1691 ntTSL 5 BASIC16.17■□□□□ 0.18
Cux1P53564 Optc-205ENSMUST00000153617 1615 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Cux1P53564 Gm15602-201ENSMUST00000116162 465 ntBASIC16.17■□□□□ 0.18
Cux1P53564 Gm15661-201ENSMUST00000117390 556 ntBASIC16.17■□□□□ 0.18
Cux1P53564 Mir1896-201ENSMUST00000122641 81 ntBASIC16.17■□□□□ 0.18
Cux1P53564 Atp5h-208ENSMUST00000180072 486 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
Cux1P53564 Ackr1-202ENSMUST00000194046 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Cux1P53564 AC154683.1-201ENSMUST00000228409 1284 ntBASIC16.17■□□□□ 0.18
Cux1P53564 Gm10250-201ENSMUST00000090488 482 ntBASIC16.17■□□□□ 0.18
Cux1P53564 Dclk2-209ENSMUST00000195561 3486 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Cux1P53564 Csnk1a1-204ENSMUST00000165123 4083 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Cux1P53564 Lingo4-201ENSMUST00000050975 3645 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Cux1P53564 Mx1-202ENSMUST00000113768 2695 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Cux1P53564 Spats2l-201ENSMUST00000163239 2313 ntTSL 5 BASIC16.17■□□□□ 0.18
Cux1P53564 Gm38025-201ENSMUST00000193926 2308 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Cux1P53564 Smc4-201ENSMUST00000042901 4316 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Cux1P53564 Alms1-ps2-202ENSMUST00000161983 2290 ntBASIC16.17■□□□□ 0.18
Cux1P53564 Pdha1-201ENSMUST00000033662 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Cux1P53564 Ptprh-202ENSMUST00000166650 3642 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Cux1P53564 Magi1-206ENSMUST00000203688 4969 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Cux1P53564 Gm2492-201ENSMUST00000221355 1394 ntBASIC16.16■□□□□ 0.18
Cux1P53564 Vstm2a-201ENSMUST00000109645 3264 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Cux1P53564 Gm45833-201ENSMUST00000211931 2730 ntTSL 5 BASIC16.16■□□□□ 0.18
Cux1P53564 P2rx7-201ENSMUST00000031425 1605 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Cux1P53564 Tfdp2-205ENSMUST00000179416 2408 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Cux1P53564 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Cux1P53564 Gm10699-201ENSMUST00000098916 2130 ntBASIC16.16■□□□□ 0.18
Cux1P53564 Gm4925-202ENSMUST00000168843 1561 ntBASIC16.16■□□□□ 0.18
Cux1P53564 Uspl1-202ENSMUST00000100410 3148 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Cux1P53564 Myh3-201ENSMUST00000007301 5992 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Cux1P53564 Grb2-204ENSMUST00000106499 2333 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Cux1P53564 Slc22a5-201ENSMUST00000019044 3062 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Cux1P53564 Klrc2-202ENSMUST00000112057 1149 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
Cux1P53564 Gm15702-201ENSMUST00000119680 444 ntBASIC16.16■□□□□ 0.18
Cux1P53564 Rps18-ps1-201ENSMUST00000120838 459 ntBASIC16.16■□□□□ 0.18
Cux1P53564 Gm12362-201ENSMUST00000121986 342 ntBASIC16.16■□□□□ 0.18
Cux1P53564 Spata3-205ENSMUST00000130504 1100 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Cux1P53564 Gm12668-201ENSMUST00000134966 575 ntTSL 3 BASIC16.16■□□□□ 0.18
Cux1P53564 Sfta2-201ENSMUST00000171166 508 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Cux1P53564 Itgb1bp1-202ENSMUST00000172834 801 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Cux1P53564 Gm20821-202ENSMUST00000180352 684 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Cux1P53564 Gm44204-201ENSMUST00000204722 737 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Cux1P53564 Defb12-201ENSMUST00000062113 1003 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Cux1P53564 n-R5s25-201ENSMUST00000082923 119 ntBASIC16.16■□□□□ 0.18
Cux1P53564 Olfr1155-201ENSMUST00000099843 945 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Cux1P53564 Ptpru-203ENSMUST00000105987 5484 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Cux1P53564 Gpa33-204ENSMUST00000166860 2227 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Cux1P53564 Rgs12-207ENSMUST00000114285 2924 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
Cux1P53564 Ripor1-201ENSMUST00000043531 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Cux1P53564 Abhd4-201ENSMUST00000041197 2401 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
Cux1P53564 Vasn-201ENSMUST00000038770 2829 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Cux1P53564 Parvg-207ENSMUST00000163667 2700 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
Cux1P53564 Tmbim7-201ENSMUST00000014673 1552 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 152.6 ms