Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Hist1h1b-201ENSMUST00000080511 743 ntAPPRIS P1 BASIC10.57□□□□□ -0.72
Ccdc28bQ8CEG5 Gm38005-201ENSMUST00000194845 2745 ntBASIC10.57□□□□□ -0.72
Ccdc28bQ8CEG5 Ppcdc-201ENSMUST00000085709 2744 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Ccdc28bQ8CEG5 Etnppl-203ENSMUST00000166187 1712 ntAPPRIS P2 TSL 1 (best) BASIC10.57□□□□□ -0.72
Ccdc28bQ8CEG5 Gm42826-201ENSMUST00000197548 2639 ntBASIC10.57□□□□□ -0.72
Ccdc28bQ8CEG5 Cln8-201ENSMUST00000027554 6857 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Ccdc28bQ8CEG5 Pla2g16-201ENSMUST00000025925 3523 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Ccdc28bQ8CEG5 Dzip1l-204ENSMUST00000112886 3970 ntAPPRIS ALT2 TSL 1 (best) BASIC10.57□□□□□ -0.72
Ccdc28bQ8CEG5 Gm38910-201ENSMUST00000204630 2448 ntBASIC10.57□□□□□ -0.72
Ccdc28bQ8CEG5 Srsf5-201ENSMUST00000094693 1527 ntAPPRIS P3 TSL 1 (best) BASIC10.57□□□□□ -0.72
Ccdc28bQ8CEG5 Ash2l-203ENSMUST00000110609 2300 ntAPPRIS ALT2 TSL 1 (best) BASIC10.57□□□□□ -0.72
Ccdc28bQ8CEG5 Rassf9-202ENSMUST00000219445 5294 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Ccdc28bQ8CEG5 Kcnv1-201ENSMUST00000022967 4389 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Ccdc28bQ8CEG5 Nmrk2-201ENSMUST00000005069 1854 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Ccdc28bQ8CEG5 Arrb2-201ENSMUST00000079056 1443 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Ccdc28bQ8CEG5 Gm42777-201ENSMUST00000196026 3603 ntBASIC10.57□□□□□ -0.72
Ccdc28bQ8CEG5 Tsc2-203ENSMUST00000226284 6266 ntAPPRIS ALT2 BASIC10.57□□□□□ -0.72
Ccdc28bQ8CEG5 Supt20-ps-201ENSMUST00000117999 1560 ntBASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Gm18198-201ENSMUST00000204986 1551 ntBASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Fbxo40-202ENSMUST00000114806 2518 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 2810454H06Rik-201ENSMUST00000189942 3148 ntBASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Fopnl-201ENSMUST00000023357 1465 ntAPPRIS P2 TSL 1 (best) BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Thoc6-202ENSMUST00000095579 1450 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 9630001P10Rik-201ENSMUST00000181083 2799 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Adgrd1-201ENSMUST00000056617 5163 ntAPPRIS P3 TSL 1 (best) BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Gsg1-203ENSMUST00000111910 1384 ntAPPRIS ALT2 TSL 5 BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Il16-203ENSMUST00000145610 3183 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 C330021F23Rik-202ENSMUST00000136592 1621 ntAPPRIS P2 TSL 1 (best) BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Anxa7-207ENSMUST00000224975 2727 ntAPPRIS P2 BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Igkv3-10-201ENSMUST00000103397 356 ntAPPRIS ALT2 BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Tpm1-210ENSMUST00000113693 1054 ntTSL 5 BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Gm13809-201ENSMUST00000117921 597 ntBASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 C230038L03Rik-202ENSMUST00000136294 1197 ntTSL 2 BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Gm15726-201ENSMUST00000144738 509 ntTSL 3 BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Mcfd2-205ENSMUST00000145895 751 ntTSL 2 BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Smpd4-223ENSMUST00000172182 516 ntTSL 3 BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Rpl31-202ENSMUST00000178079 487 ntAPPRIS P1 TSL 2 BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Gm26542-201ENSMUST00000180443 1235 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 1700120C18Rik-201ENSMUST00000182952 985 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Gm27241-202ENSMUST00000185013 570 ntTSL 2 BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Gm4131-201ENSMUST00000186010 1264 ntAPPRIS P1 TSL 5 BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Gm29346-201ENSMUST00000188147 255 ntTSL 3 BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Ighv1-62-201ENSMUST00000193406 350 ntBASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Atraid-205ENSMUST00000201136 894 ntAPPRIS ALT2 TSL 3 BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Gm43852-201ENSMUST00000202098 917 ntBASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Gm44741-201ENSMUST00000207503 2127 ntBASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Gm2253-201ENSMUST00000211775 414 ntBASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Gm45909-201ENSMUST00000212413 1031 ntBASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Acy1-209ENSMUST00000215395 1051 ntTSL 5 BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Gm36176-201ENSMUST00000218749 501 ntAPPRIS P1 BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 BC049762-202ENSMUST00000065950 883 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Krtap5-1-201ENSMUST00000084413 588 ntAPPRIS P1 TSL 5 BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Pcdh18-201ENSMUST00000035931 5168 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Npnt-205ENSMUST00000117456 3383 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Scml4-201ENSMUST00000063063 4885 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Esrp2-201ENSMUST00000115979 3536 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Olfr272-202ENSMUST00000107667 1936 ntAPPRIS P1 TSL 3 BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Plscr2-205ENSMUST00000180154 1900 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Micall2-204ENSMUST00000170773 3157 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Atp11c-201ENSMUST00000033480 5939 ntAPPRIS ALT2 TSL 5 BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Tnfsf18-201ENSMUST00000086084 2066 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Gm11661-201ENSMUST00000121761 1327 ntBASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Zp3-201ENSMUST00000005073 1323 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Ndufab1-201ENSMUST00000033157 3479 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Tardbp-210ENSMUST00000172073 6513 ntTSL 5 BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 Uhrf1-204ENSMUST00000113039 3391 ntAPPRIS P3 TSL 1 (best) BASIC10.56□□□□□ -0.72
Ccdc28bQ8CEG5 2610005L07Rik-202ENSMUST00000140111 4009 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
Ccdc28bQ8CEG5 Asxl2-207ENSMUST00000153102 4462 ntAPPRIS P2 TSL 5 BASIC10.55□□□□□ -0.72
Ccdc28bQ8CEG5 Hist2h4-201ENSMUST00000171473 1630 ntAPPRIS P1 BASIC10.55□□□□□ -0.72
Ccdc28bQ8CEG5 AC132467.2-201ENSMUST00000226306 2253 ntBASIC10.55□□□□□ -0.72
Ccdc28bQ8CEG5 Zbtb8b-202ENSMUST00000106046 3323 ntAPPRIS ALT2 TSL 1 (best) BASIC10.55□□□□□ -0.72
Ccdc28bQ8CEG5 Mdga2-212ENSMUST00000222987 1388 ntTSL 5 BASIC10.55□□□□□ -0.72
Ccdc28bQ8CEG5 Cdh23-205ENSMUST00000105464 11090 ntAPPRIS P2 TSL 5 BASIC10.55□□□□□ -0.72
Ccdc28bQ8CEG5 Kif1b-203ENSMUST00000060537 10233 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
Ccdc28bQ8CEG5 P4ha1-201ENSMUST00000009789 4043 ntAPPRIS P3 TSL 1 (best) BASIC10.55□□□□□ -0.72
Ccdc28bQ8CEG5 Pwp1-201ENSMUST00000001836 2572 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Ccdc28bQ8CEG5 Kcnmb1-201ENSMUST00000020362 4191 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Ccdc28bQ8CEG5 Tceanc-202ENSMUST00000112188 4050 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Ccdc28bQ8CEG5 Kcnj15-206ENSMUST00000113859 5046 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
Ccdc28bQ8CEG5 Gpr149-201ENSMUST00000058535 4222 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Ccdc28bQ8CEG5 Gm5795-201ENSMUST00000100920 984 ntAPPRIS P2 TSL 5 BASIC10.55□□□□□ -0.72
Ccdc28bQ8CEG5 Gm7851-201ENSMUST00000117574 323 ntBASIC10.55□□□□□ -0.72
Ccdc28bQ8CEG5 2900011O08Rik-202ENSMUST00000118412 954 ntTSL 3 BASIC10.55□□□□□ -0.72
Ccdc28bQ8CEG5 Gm12337-201ENSMUST00000119634 400 ntBASIC10.55□□□□□ -0.72
Ccdc28bQ8CEG5 Gm3948-201ENSMUST00000147795 421 ntTSL 3 BASIC10.55□□□□□ -0.72
Ccdc28bQ8CEG5 Pcgf1-202ENSMUST00000165164 918 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Ccdc28bQ8CEG5 Gm17019-201ENSMUST00000167908 1162 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Ccdc28bQ8CEG5 Gm3685-201ENSMUST00000169215 984 ntAPPRIS P5 TSL 5 BASIC10.55□□□□□ -0.72
Ccdc28bQ8CEG5 Gm18367-201ENSMUST00000176139 600 ntBASIC10.55□□□□□ -0.72
Ccdc28bQ8CEG5 Ly6l-201ENSMUST00000177479 430 ntAPPRIS P1 TSL 5 BASIC10.55□□□□□ -0.72
Ccdc28bQ8CEG5 Hspb9-201ENSMUST00000017976 652 ntAPPRIS ALT2 BASIC10.55□□□□□ -0.72
Ccdc28bQ8CEG5 Swi5-207ENSMUST00000183946 768 ntAPPRIS P3 TSL 1 (best) BASIC10.55□□□□□ -0.72
Ccdc28bQ8CEG5 Pmvk-203ENSMUST00000184515 1156 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
Ccdc28bQ8CEG5 1600010M07Rik-202ENSMUST00000188662 654 ntTSL 2 BASIC10.55□□□□□ -0.72
Ccdc28bQ8CEG5 Gm44551-201ENSMUST00000208804 171 ntBASIC10.55□□□□□ -0.72
Ccdc28bQ8CEG5 Gm39460-201ENSMUST00000215728 1266 ntTSL 5 BASIC10.55□□□□□ -0.72
Ccdc28bQ8CEG5 Gm10318-202ENSMUST00000217996 639 ntTSL 5 BASIC10.55□□□□□ -0.72
Retrieved 100 of 76,532 protein–RNA pairs in 40.5 ms