Protein–RNA interactions for Protein: Q3TL54

Trim43a, Tripartite motif-containing protein 43A, mousemouse

Predictions only

Length 445 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim43aQ3TL54 Timd2-202ENSMUST00000109225 2236 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.59
Trim43aQ3TL54 Gpa33-204ENSMUST00000166860 2227 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.59
Trim43aQ3TL54 Cnppd1-202ENSMUST00000168720 3669 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.59
Trim43aQ3TL54 Tjp1-201ENSMUST00000032729 6102 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.59
Trim43aQ3TL54 Srpk1-204ENSMUST00000130643 4465 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Ncf2-201ENSMUST00000027754 2596 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Lyn-201ENSMUST00000041377 3463 ntAPPRIS ALT1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim43aQ3TL54 6230400D17Rik-201ENSMUST00000180987 1554 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Amph-201ENSMUST00000003345 3367 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Gm26670-201ENSMUST00000180429 3287 ntBASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Odf2-207ENSMUST00000113762 2353 ntTSL 5 BASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Gm29101-201ENSMUST00000188329 1471 ntBASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Gm44999-201ENSMUST00000207456 1493 ntBASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Atp11c-202ENSMUST00000101527 6044 ntAPPRIS P4 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim43aQ3TL54 C130026L21Rik-204ENSMUST00000199587 1838 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Tenm2-208ENSMUST00000163524 8668 ntAPPRIS P2 TSL 5 BASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Zeb1-201ENSMUST00000025081 5805 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Oprm1-222ENSMUST00000135502 1363 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Gm5308-201ENSMUST00000196752 1354 ntBASIC11.33□□□□□ -0.6
Trim43aQ3TL54 4933422A05Rik-201ENSMUST00000213706 1356 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Vil1-201ENSMUST00000027366 3124 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Gngt2-205ENSMUST00000107711 563 ntAPPRIS P1 TSL 2 BASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Lypla1-202ENSMUST00000115529 930 ntTSL 2 BASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Gm16518-201ENSMUST00000117960 508 ntBASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Gm12029-201ENSMUST00000120073 832 ntBASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Nhp2-202ENSMUST00000127405 1042 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Gm14291-201ENSMUST00000143645 804 ntTSL 2 BASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Gm20535-201ENSMUST00000173157 1268 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Nkx2-2os-202ENSMUST00000184407 458 ntBASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Mir6546-201ENSMUST00000184460 62 ntBASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Gm29088-201ENSMUST00000189363 581 ntTSL 3 BASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Gm6677-201ENSMUST00000195100 441 ntBASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Gm7047-201ENSMUST00000196224 1063 ntBASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Mt1-202ENSMUST00000211807 1085 ntBASIC11.33□□□□□ -0.6
Trim43aQ3TL54 AC162938.2-204ENSMUST00000216455 984 ntTSL 5 BASIC11.33□□□□□ -0.6
Trim43aQ3TL54 AC122876.1-201ENSMUST00000217619 825 ntBASIC11.33□□□□□ -0.6
Trim43aQ3TL54 AC116680.1-201ENSMUST00000222804 613 ntTSL 3 BASIC11.33□□□□□ -0.6
Trim43aQ3TL54 AC124433.1-201ENSMUST00000224483 1063 ntBASIC11.33□□□□□ -0.6
Trim43aQ3TL54 AC135469.1-201ENSMUST00000225984 772 ntBASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Ngdn-201ENSMUST00000022815 1200 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Mok-203ENSMUST00000084974 1132 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Cd300c2-201ENSMUST00000092464 1187 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Tom1l2-203ENSMUST00000093048 4864 ntTSL 5 BASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Tfap2b-204ENSMUST00000187754 3023 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Timm9-208ENSMUST00000221797 2564 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Stat5a-201ENSMUST00000004145 3888 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Kirrel3-201ENSMUST00000045091 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Mfsd2b-201ENSMUST00000045921 2490 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim43aQ3TL54 4932442E05Rik-201ENSMUST00000191892 2717 ntBASIC11.33□□□□□ -0.6
Trim43aQ3TL54 AC153498.1-201ENSMUST00000219775 2722 ntBASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Sfxn5-201ENSMUST00000045846 3656 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Spata16-201ENSMUST00000047005 2022 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Mical2-202ENSMUST00000050149 6669 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Dhx34-207ENSMUST00000163968 3801 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Slc6a12-209ENSMUST00000171008 1674 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
Trim43aQ3TL54 AC122018.1-201ENSMUST00000217769 1686 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Gtf2i-222ENSMUST00000174354 4084 ntAPPRIS ALT2 TSL 2 BASIC11.33□□□□□ -0.6
Trim43aQ3TL54 9630001P10Rik-201ENSMUST00000181083 2799 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Trim43aQ3TL54 E130308A19Rik-202ENSMUST00000070150 10856 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Cenpo-202ENSMUST00000111169 1550 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Htr3b-201ENSMUST00000008734 2411 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim43aQ3TL54 Clasp2-201ENSMUST00000111838 5609 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim43aQ3TL54 Zfp317-205ENSMUST00000215372 2809 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim43aQ3TL54 Ankrd53-201ENSMUST00000014891 1739 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim43aQ3TL54 Gm38312-201ENSMUST00000195426 1746 ntBASIC11.32□□□□□ -0.6
Trim43aQ3TL54 4933413C19Rik-201ENSMUST00000162380 2217 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Trim43aQ3TL54 Tor1aip2-204ENSMUST00000111754 2491 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Trim43aQ3TL54 Ndrg4-202ENSMUST00000073139 2966 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim43aQ3TL54 Clip1-204ENSMUST00000111564 5609 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim43aQ3TL54 Nfkbiz-204ENSMUST00000114458 3627 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim43aQ3TL54 Bcl2l1-206ENSMUST00000140436 1865 ntTSL 2 BASIC11.32□□□□□ -0.6
Trim43aQ3TL54 Col6a3-202ENSMUST00000097653 9001 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
Trim43aQ3TL54 Myh4-201ENSMUST00000018632 6016 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
Trim43aQ3TL54 Plpbp-203ENSMUST00000209525 5767 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Trim43aQ3TL54 Ccdc136-202ENSMUST00000115275 3279 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
Trim43aQ3TL54 Atp6v0a4-201ENSMUST00000040259 3285 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim43aQ3TL54 Ackr2-202ENSMUST00000214340 3015 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim43aQ3TL54 Gm26625-201ENSMUST00000181519 2538 ntTSL 5 BASIC11.32□□□□□ -0.6
Trim43aQ3TL54 Olfr287-204ENSMUST00000170618 1776 ntAPPRIS P1 TSL 2 BASIC11.32□□□□□ -0.6
Trim43aQ3TL54 Trim69-201ENSMUST00000036089 1758 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim43aQ3TL54 Sept9-204ENSMUST00000106349 2932 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim43aQ3TL54 Gm12176-201ENSMUST00000121420 875 ntBASIC11.32□□□□□ -0.6
Trim43aQ3TL54 Gm14460-201ENSMUST00000121511 639 ntBASIC11.32□□□□□ -0.6
Trim43aQ3TL54 Gm14235-201ENSMUST00000142445 366 ntTSL 3 BASIC11.32□□□□□ -0.6
Trim43aQ3TL54 Gm15952-202ENSMUST00000144542 556 ntTSL 3 BASIC11.32□□□□□ -0.6
Trim43aQ3TL54 Gm11728-201ENSMUST00000150628 660 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Trim43aQ3TL54 Bloc1s1-205ENSMUST00000153731 613 ntTSL 5 BASIC11.32□□□□□ -0.6
Trim43aQ3TL54 Gm16226-204ENSMUST00000162639 423 ntTSL 3 BASIC11.32□□□□□ -0.6
Trim43aQ3TL54 Smlr1-201ENSMUST00000179685 669 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim43aQ3TL54 A930036K24Rik-201ENSMUST00000194146 1200 ntBASIC11.32□□□□□ -0.6
Trim43aQ3TL54 A430050A11Rik-201ENSMUST00000195348 646 ntBASIC11.32□□□□□ -0.6
Trim43aQ3TL54 Fam168a-204ENSMUST00000207564 1083 ntTSL 5 BASIC11.32□□□□□ -0.6
Trim43aQ3TL54 Gm5599-201ENSMUST00000209602 788 ntBASIC11.32□□□□□ -0.6
Trim43aQ3TL54 Gm7319-201ENSMUST00000210047 778 ntBASIC11.32□□□□□ -0.6
Trim43aQ3TL54 C330004P14Rik-201ENSMUST00000218833 628 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Trim43aQ3TL54 Gm18974-201ENSMUST00000221478 1031 ntBASIC11.32□□□□□ -0.6
Trim43aQ3TL54 Phxr2-201ENSMUST00000060761 1159 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
Trim43aQ3TL54 Orc4-202ENSMUST00000090976 1153 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Trim43aQ3TL54 Casq2-205ENSMUST00000165540 2434 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim43aQ3TL54 Gm37909-201ENSMUST00000193157 2159 ntBASIC11.32□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 53.6 ms