Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Gm8899-201ENSMUST00000214635 1332 ntBASIC8.74□□□□□ -1.01
Hoxd3P09027 Sln-201ENSMUST00000048485 1318 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
Hoxd3P09027 Pnma5-202ENSMUST00000114540 2287 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
Hoxd3P09027 Gm26872-201ENSMUST00000180862 2261 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
Hoxd3P09027 Pcdh18-201ENSMUST00000035931 5168 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
Hoxd3P09027 Fbxl12os-203ENSMUST00000138471 2127 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
Hoxd3P09027 Gm16083-201ENSMUST00000125681 2547 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
Hoxd3P09027 D030068K23Rik-203ENSMUST00000181098 1399 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
Hoxd3P09027 Gm9915-201ENSMUST00000066196 1383 ntBASIC8.73□□□□□ -1.01
Hoxd3P09027 Pnmal2-201ENSMUST00000094807 4147 ntAPPRIS P1 BASIC8.73□□□□□ -1.01
Hoxd3P09027 Prps1-201ENSMUST00000033809 1965 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
Hoxd3P09027 Palb2-204ENSMUST00000106469 2559 ntAPPRIS ALT2 TSL 1 (best) BASIC8.73□□□□□ -1.01
Hoxd3P09027 Nrros-202ENSMUST00000115163 3559 ntAPPRIS P3 TSL 1 (best) BASIC8.73□□□□□ -1.01
Hoxd3P09027 Ss18-202ENSMUST00000040964 4153 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
Hoxd3P09027 4632427E13Rik-202ENSMUST00000147198 6559 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
Hoxd3P09027 Myh11-201ENSMUST00000090287 6632 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
Hoxd3P09027 Syt11-203ENSMUST00000107505 5020 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
Hoxd3P09027 Rasal2-204ENSMUST00000132699 4013 ntAPPRIS ALT2 TSL 5 BASIC8.73□□□□□ -1.01
Hoxd3P09027 Sema4c-208ENSMUST00000195620 3640 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
Hoxd3P09027 Nr4a2-202ENSMUST00000112627 2400 ntTSL 5 BASIC8.73□□□□□ -1.01
Hoxd3P09027 E030026E10Rik-201ENSMUST00000200395 2217 ntBASIC8.73□□□□□ -1.01
Hoxd3P09027 Nrf1-206ENSMUST00000115204 2047 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
Hoxd3P09027 Mndal-204ENSMUST00000188804 2026 ntAPPRIS P2 TSL 1 (best) BASIC8.73□□□□□ -1.01
Hoxd3P09027 Plrg1-202ENSMUST00000122128 1608 ntTSL 5 BASIC8.73□□□□□ -1.01
Hoxd3P09027 AC091783.1-201ENSMUST00000223614 1613 ntBASIC8.73□□□□□ -1.01
Hoxd3P09027 Spem2-201ENSMUST00000056941 1640 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
Hoxd3P09027 Nefm-202ENSMUST00000111089 3680 ntAPPRIS ALT2 TSL 1 (best) BASIC8.73□□□□□ -1.01
Hoxd3P09027 Son-202ENSMUST00000114037 8399 ntAPPRIS P2 TSL 1 (best) BASIC8.73□□□□□ -1.01
Hoxd3P09027 Spop-201ENSMUST00000107722 3063 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
Hoxd3P09027 Gm14137-201ENSMUST00000069711 3067 ntAPPRIS P1 BASIC8.73□□□□□ -1.01
Hoxd3P09027 Car10-206ENSMUST00000107863 3334 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
Hoxd3P09027 Gm10851-201ENSMUST00000192087 1685 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
Hoxd3P09027 Fcrla-201ENSMUST00000046322 1679 ntAPPRIS P4 TSL 1 (best) BASIC8.73□□□□□ -1.01
Hoxd3P09027 Ighv10-3-201ENSMUST00000103495 377 ntAPPRIS P1 BASIC8.73□□□□□ -1.01
Hoxd3P09027 Gm25063-201ENSMUST00000104666 94 ntBASIC8.73□□□□□ -1.01
Hoxd3P09027 Ralyl-202ENSMUST00000108373 267 ntTSL 5 BASIC8.73□□□□□ -1.01
Hoxd3P09027 Pigp-201ENSMUST00000113905 758 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
Hoxd3P09027 Ankrd7-202ENSMUST00000115396 1157 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
Hoxd3P09027 Snrnp27-201ENSMUST00000001186 885 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
Hoxd3P09027 Pcnp-203ENSMUST00000119981 901 ntTSL 3 BASIC8.73□□□□□ -1.01
Hoxd3P09027 Csf1-204ENSMUST00000120654 821 ntTSL 3 BASIC8.73□□□□□ -1.01
Hoxd3P09027 Gm12731-201ENSMUST00000120932 268 ntBASIC8.73□□□□□ -1.01
Hoxd3P09027 Tbata-203ENSMUST00000121297 1000 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
Hoxd3P09027 Vps25-205ENSMUST00000121331 790 ntTSL 2 BASIC8.73□□□□□ -1.01
Hoxd3P09027 Olfr75-ps1-201ENSMUST00000135477 938 ntBASIC8.73□□□□□ -1.01
Hoxd3P09027 Gm15412-201ENSMUST00000137193 1096 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
Hoxd3P09027 Gm24992-201ENSMUST00000157412 130 ntBASIC8.73□□□□□ -1.01
Hoxd3P09027 Gm23777-201ENSMUST00000158994 259 ntBASIC8.73□□□□□ -1.01
Hoxd3P09027 Igkv2-95-2-201ENSMUST00000166362 222 ntBASIC8.73□□□□□ -1.01
Hoxd3P09027 Gm17046-201ENSMUST00000168078 850 ntBASIC8.73□□□□□ -1.01
Hoxd3P09027 Gm19791-201ENSMUST00000180398 859 ntBASIC8.73□□□□□ -1.01
Hoxd3P09027 Mir6407-201ENSMUST00000184510 101 ntBASIC8.73□□□□□ -1.01
Hoxd3P09027 1700052I22Rik-201ENSMUST00000190431 379 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
Hoxd3P09027 Gm28466-201ENSMUST00000190678 659 ntBASIC8.73□□□□□ -1.01
Hoxd3P09027 Gm37850-201ENSMUST00000194573 549 ntTSL 5 BASIC8.73□□□□□ -1.01
Hoxd3P09027 Gm5100-201ENSMUST00000195631 589 ntBASIC8.73□□□□□ -1.01
Hoxd3P09027 Gm43163-201ENSMUST00000196571 442 ntBASIC8.73□□□□□ -1.01
Hoxd3P09027 Gm42454-201ENSMUST00000196805 1181 ntBASIC8.73□□□□□ -1.01
Hoxd3P09027 Gm17937-201ENSMUST00000197908 742 ntBASIC8.73□□□□□ -1.01
Hoxd3P09027 Gm19065-202ENSMUST00000203910 1165 ntBASIC8.73□□□□□ -1.01
Hoxd3P09027 Gm44213-201ENSMUST00000204977 703 ntBASIC8.73□□□□□ -1.01
Hoxd3P09027 Gm8952-201ENSMUST00000206828 1102 ntBASIC8.73□□□□□ -1.01
Hoxd3P09027 AC127302.1-201ENSMUST00000215973 1111 ntBASIC8.73□□□□□ -1.01
Hoxd3P09027 Gm9139-201ENSMUST00000218817 700 ntBASIC8.73□□□□□ -1.01
Hoxd3P09027 Gm40653-202ENSMUST00000222122 1155 ntTSL 5 BASIC8.73□□□□□ -1.01
Hoxd3P09027 CT010575.2-201ENSMUST00000222876 496 ntTSL 2 BASIC8.73□□□□□ -1.01
Hoxd3P09027 AC164618.2-201ENSMUST00000224770 573 ntBASIC8.73□□□□□ -1.01
Hoxd3P09027 CT025602.2-201ENSMUST00000226553 772 ntBASIC8.73□□□□□ -1.01
Hoxd3P09027 AC163295.2-202ENSMUST00000227763 1053 ntBASIC8.73□□□□□ -1.01
Hoxd3P09027 Fth1-201ENSMUST00000025563 866 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
Hoxd3P09027 Olfr273-201ENSMUST00000051520 1059 ntAPPRIS P1 BASIC8.73□□□□□ -1.01
Hoxd3P09027 Gm9873-201ENSMUST00000063891 1097 ntBASIC8.73□□□□□ -1.01
Hoxd3P09027 Cdkn3-201ENSMUST00000067426 917 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
Hoxd3P09027 Gm2174-201ENSMUST00000079663 402 ntAPPRIS P1 BASIC8.73□□□□□ -1.01
Hoxd3P09027 Gm9962-201ENSMUST00000085241 321 ntTSL 5 BASIC8.73□□□□□ -1.01
Hoxd3P09027 Vmn1r201-201ENSMUST00000091730 903 ntAPPRIS P1 BASIC8.73□□□□□ -1.01
Hoxd3P09027 Akap7-202ENSMUST00000095779 919 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
Hoxd3P09027 Olfr1047-201ENSMUST00000099901 960 ntAPPRIS P1 BASIC8.73□□□□□ -1.01
Hoxd3P09027 Acat1-201ENSMUST00000034547 3405 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
Hoxd3P09027 Phyhipl-206ENSMUST00000162251 1540 ntTSL 3 BASIC8.73□□□□□ -1.01
Hoxd3P09027 Rd3l-202ENSMUST00000185354 1541 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
Hoxd3P09027 Ppil2-203ENSMUST00000115721 3088 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
Hoxd3P09027 Gm42427-201ENSMUST00000200473 5292 ntBASIC8.73□□□□□ -1.01
Hoxd3P09027 Clcc1-202ENSMUST00000106609 2043 ntAPPRIS P3 TSL 1 (best) BASIC8.73□□□□□ -1.01
Hoxd3P09027 Cep97-203ENSMUST00000118500 3389 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
Hoxd3P09027 Gm9544-201ENSMUST00000223349 2482 ntBASIC8.73□□□□□ -1.01
Hoxd3P09027 A430033K04Rik-203ENSMUST00000198958 2264 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
Hoxd3P09027 Gm15941-205ENSMUST00000140044 1825 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
Hoxd3P09027 Zmiz2-205ENSMUST00000109787 4116 ntAPPRIS P2 TSL 5 BASIC8.73□□□□□ -1.01
Hoxd3P09027 Gm44843-201ENSMUST00000208320 1396 ntBASIC8.73□□□□□ -1.01
Hoxd3P09027 5033428I22Rik-204ENSMUST00000210633 6652 ntTSL 5 BASIC8.73□□□□□ -1.01
Hoxd3P09027 Zfp251-201ENSMUST00000080406 3497 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
Hoxd3P09027 Knop1-202ENSMUST00000063607 4884 ntAPPRIS ALT2 TSL 1 (best) BASIC8.72□□□□□ -1.01
Hoxd3P09027 Entpd8-203ENSMUST00000114380 2301 ntAPPRIS P2 TSL 1 (best) BASIC8.72□□□□□ -1.01
Hoxd3P09027 Gm2128-201ENSMUST00000108009 2560 ntBASIC8.72□□□□□ -1.01
Hoxd3P09027 Gp2-202ENSMUST00000207887 1853 ntAPPRIS ALT2 TSL 1 (best) BASIC8.72□□□□□ -1.01
Hoxd3P09027 Olfr1188-202ENSMUST00000217131 1406 ntAPPRIS ALT2 TSL 3 BASIC8.72□□□□□ -1.01
Hoxd3P09027 Samd11-201ENSMUST00000179919 2610 ntAPPRIS P2 TSL 1 (best) BASIC8.72□□□□□ -1.01
Hoxd3P09027 Pmaip1-201ENSMUST00000025399 2646 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
Hoxd3P09027 Mafb-201ENSMUST00000099126 3363 ntAPPRIS P1 BASIC8.72□□□□□ -1.01
Retrieved 100 of 76,532 protein–RNA pairs in 48.2 ms