Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Park2-203ENSMUST00000168593 735 ntTSL 5 BASIC12.77□□□□□ -0.37
Rfx1P48377 Gm5294-201ENSMUST00000179205 651 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
Rfx1P48377 Gm5732-201ENSMUST00000182596 1007 ntBASIC12.77□□□□□ -0.37
Rfx1P48377 Gm5599-201ENSMUST00000209602 788 ntBASIC12.77□□□□□ -0.37
Rfx1P48377 Park2-210ENSMUST00000218435 865 ntTSL 5 BASIC12.77□□□□□ -0.37
Rfx1P48377 AC154276.3-201ENSMUST00000227643 998 ntBASIC12.77□□□□□ -0.37
Rfx1P48377 Slc45a3-202ENSMUST00000177943 3212 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Rfx1P48377 D2hgdh-202ENSMUST00000112881 3459 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Rfx1P48377 Gm12097-201ENSMUST00000121523 1414 ntBASIC12.77□□□□□ -0.37
Rfx1P48377 Gcc1-201ENSMUST00000064377 2859 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Rfx1P48377 Lrrc4-201ENSMUST00000062304 3615 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
Rfx1P48377 Raf1-202ENSMUST00000112949 2946 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Rfx1P48377 2610028H24Rik-202ENSMUST00000105415 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Rfx1P48377 Gpa33-204ENSMUST00000166860 2227 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Rfx1P48377 Lexm-204ENSMUST00000189032 1549 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Rfx1P48377 Itgal-203ENSMUST00000118405 3909 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Rfx1P48377 Gm45397-201ENSMUST00000209816 1600 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Rfx1P48377 Ctsa-202ENSMUST00000103092 3646 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Rfx1P48377 Ppcdc-201ENSMUST00000085709 2744 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Rfx1P48377 Pmp22-201ENSMUST00000018361 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Rfx1P48377 AI593442-201ENSMUST00000098768 5615 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Rfx1P48377 Trem1-201ENSMUST00000048782 2993 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Rfx1P48377 Napepld-202ENSMUST00000115217 3954 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Rfx1P48377 Pex5-203ENSMUST00000112530 3051 ntTSL 5 BASIC12.76□□□□□ -0.37
Rfx1P48377 Itih3-205ENSMUST00000227995 2100 ntAPPRIS ALT2 BASIC12.76□□□□□ -0.37
Rfx1P48377 Plscr4-201ENSMUST00000034941 3204 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Rfx1P48377 Dysf-202ENSMUST00000089595 6613 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Rfx1P48377 Kdm4a-204ENSMUST00000106406 4663 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Rfx1P48377 Acss3-203ENSMUST00000165067 4696 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Rfx1P48377 Slc7a3-202ENSMUST00000101362 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Rfx1P48377 Urad-201ENSMUST00000100433 766 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Rfx1P48377 Inca1-202ENSMUST00000108541 1150 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Rfx1P48377 Inca1-203ENSMUST00000108542 1080 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Rfx1P48377 Dynlrb1-202ENSMUST00000109682 684 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Rfx1P48377 Rpl35a-205ENSMUST00000115079 510 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
Rfx1P48377 Gm14028-201ENSMUST00000117434 479 ntBASIC12.76□□□□□ -0.37
Rfx1P48377 Gm15725-201ENSMUST00000119947 1090 ntBASIC12.76□□□□□ -0.37
Rfx1P48377 Inca1-205ENSMUST00000126114 1189 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Rfx1P48377 Tro-208ENSMUST00000164071 891 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Rfx1P48377 Apoe-210ENSMUST00000174710 514 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Rfx1P48377 Gm4753-201ENSMUST00000188327 1255 ntBASIC12.76□□□□□ -0.37
Rfx1P48377 Gm28516-201ENSMUST00000190257 663 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Rfx1P48377 Ccdc12-201ENSMUST00000019803 834 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Rfx1P48377 Gm45310-201ENSMUST00000210436 275 ntBASIC12.76□□□□□ -0.37
Rfx1P48377 Gm7848-201ENSMUST00000210739 718 ntBASIC12.76□□□□□ -0.37
Rfx1P48377 Gm36176-201ENSMUST00000218749 501 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
Rfx1P48377 CT030182.1-201ENSMUST00000225935 533 ntBASIC12.76□□□□□ -0.37
Rfx1P48377 Inca1-201ENSMUST00000073625 1218 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Rfx1P48377 Phc1-215ENSMUST00000161739 3893 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Rfx1P48377 Gm8899-201ENSMUST00000214635 1332 ntBASIC12.76□□□□□ -0.37
Rfx1P48377 Got1l1-201ENSMUST00000038174 1356 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Rfx1P48377 Fbp1-201ENSMUST00000092888 1479 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Rfx1P48377 Krt34-201ENSMUST00000056362 1609 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Rfx1P48377 Dlgap4-206ENSMUST00000109568 3256 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Rfx1P48377 Rasal1-205ENSMUST00000156722 3251 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Rfx1P48377 E330034L11Rik-201ENSMUST00000200640 1742 ntBASIC12.76□□□□□ -0.37
Rfx1P48377 AC164161.2-201ENSMUST00000217446 1730 ntTSL 5 BASIC12.76□□□□□ -0.37
Rfx1P48377 Tbc1d17-201ENSMUST00000047085 8750 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Rfx1P48377 Shroom2-202ENSMUST00000101141 7494 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Rfx1P48377 Cyp2g1-201ENSMUST00000040944 1896 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Rfx1P48377 Fscn3-201ENSMUST00000031719 1902 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Rfx1P48377 Ralgps1-205ENSMUST00000131298 6035 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Rfx1P48377 Med19-201ENSMUST00000102645 2059 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Rfx1P48377 Fyn-207ENSMUST00000146287 2135 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Rfx1P48377 4933413C19Rik-201ENSMUST00000162380 2217 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Rfx1P48377 Qars-203ENSMUST00000134939 2374 ntTSL 5 BASIC12.76□□□□□ -0.37
Rfx1P48377 Diaph1-201ENSMUST00000025337 5596 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Rfx1P48377 Fblim1-203ENSMUST00000105785 3091 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Rfx1P48377 Wdr19-204ENSMUST00000203653 6279 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Rfx1P48377 Gm38199-201ENSMUST00000192013 3277 ntBASIC12.75□□□□□ -0.37
Rfx1P48377 Ptpn7-201ENSMUST00000049449 3261 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Rfx1P48377 Zmpste24-201ENSMUST00000058754 3429 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Rfx1P48377 Atg13-202ENSMUST00000076803 3551 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Rfx1P48377 Ep400-210ENSMUST00000146458 3673 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Rfx1P48377 Ano2-204ENSMUST00000160496 3925 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Rfx1P48377 Pdp2-201ENSMUST00000059588 5692 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Rfx1P48377 Ostm1-202ENSMUST00000105497 770 ntTSL 2 BASIC12.75□□□□□ -0.37
Rfx1P48377 Ncmap-202ENSMUST00000105857 958 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Rfx1P48377 Smim5-201ENSMUST00000131566 700 ntTSL 2 BASIC12.75□□□□□ -0.37
Rfx1P48377 Oprm1-222ENSMUST00000135502 1363 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Rfx1P48377 D030055H07Rik-201ENSMUST00000143956 2712 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Rfx1P48377 Bloc1s1-205ENSMUST00000153731 613 ntTSL 5 BASIC12.75□□□□□ -0.37
Rfx1P48377 Fcrl1-202ENSMUST00000163661 1649 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Rfx1P48377 4930471C04Rik-201ENSMUST00000166038 865 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Rfx1P48377 Gm4219-201ENSMUST00000168140 2143 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Rfx1P48377 Gm28923-201ENSMUST00000187755 322 ntBASIC12.75□□□□□ -0.37
Rfx1P48377 Sh3bgrl2-203ENSMUST00000188030 2549 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Rfx1P48377 Cd22-213ENSMUST00000190617 3230 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Rfx1P48377 BC026585-203ENSMUST00000193791 778 ntTSL 2 BASIC12.75□□□□□ -0.37
Rfx1P48377 Gm10748-202ENSMUST00000194396 2379 ntBASIC12.75□□□□□ -0.37
Rfx1P48377 C130026L21Rik-204ENSMUST00000199587 1838 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Rfx1P48377 Gm44136-201ENSMUST00000203819 1106 ntBASIC12.75□□□□□ -0.37
Rfx1P48377 Pde2a-204ENSMUST00000209537 4100 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Rfx1P48377 Gm45359-201ENSMUST00000210635 427 ntBASIC12.75□□□□□ -0.37
Rfx1P48377 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC12.75□□□□□ -0.37
Rfx1P48377 Ddo-207ENSMUST00000216830 806 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Rfx1P48377 Gm5122-202ENSMUST00000216854 1637 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Rfx1P48377 Gm5178-201ENSMUST00000219380 898 ntBASIC12.75□□□□□ -0.37
Rfx1P48377 AC164099.2-201ENSMUST00000227795 2005 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
Rfx1P48377 Cptp-201ENSMUST00000030950 2662 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 68.4 ms