Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Tmem109-201ENSMUST00000038128 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cux1P53564 AC147366.2-201ENSMUST00000226859 2038 ntBASIC16.27■□□□□ 0.2
Cux1P53564 Arg2-201ENSMUST00000021550 1428 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cux1P53564 Slc20a1-201ENSMUST00000028880 3316 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cux1P53564 Ube2l3-203ENSMUST00000115700 571 ntTSL 5 BASIC16.27■□□□□ 0.2
Cux1P53564 Gm15264-201ENSMUST00000118050 502 ntBASIC16.27■□□□□ 0.2
Cux1P53564 Gm22763-201ENSMUST00000158374 107 ntBASIC16.27■□□□□ 0.2
Cux1P53564 1700029N11Rik-203ENSMUST00000220639 1092 ntTSL 5 BASIC16.27■□□□□ 0.2
Cux1P53564 Tmem89-201ENSMUST00000026744 538 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cux1P53564 1700016D06Rik-201ENSMUST00000033906 1263 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cux1P53564 Htr1b-201ENSMUST00000051005 1273 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
Cux1P53564 P2rx1-202ENSMUST00000092938 1119 ntTSL 5 BASIC16.27■□□□□ 0.2
Cux1P53564 Parp9-203ENSMUST00000114878 3548 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cux1P53564 Pde4c-207ENSMUST00000224874 3099 ntAPPRIS ALT2 BASIC16.27■□□□□ 0.19
Cux1P53564 Gm14685-202ENSMUST00000179117 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Cux1P53564 Hk1-202ENSMUST00000099691 4278 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Cux1P53564 Calcoco1-204ENSMUST00000171838 2968 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Cux1P53564 Adora1-202ENSMUST00000086465 4968 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Cux1P53564 Tesk2-201ENSMUST00000045542 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Cux1P53564 AC164441.2-201ENSMUST00000220818 2746 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Cux1P53564 Rab11fip1-203ENSMUST00000209377 3769 ntTSL 5 BASIC16.27■□□□□ 0.19
Cux1P53564 Cpt1c-201ENSMUST00000063761 2793 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Cux1P53564 Ptbp1-216ENSMUST00000172282 3110 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
Cux1P53564 Fads1-201ENSMUST00000010807 3456 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Cux1P53564 Exoc7-201ENSMUST00000021147 3337 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Cux1P53564 Anxa6-201ENSMUST00000102727 2471 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Cux1P53564 Slc7a9-203ENSMUST00000118969 1765 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Cux1P53564 Pnpla6-211ENSMUST00000207941 4263 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Cux1P53564 Spert-201ENSMUST00000035243 1430 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
Cux1P53564 Cacnb2-203ENSMUST00000114723 3945 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Cux1P53564 Cct2-201ENSMUST00000047672 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Cux1P53564 Ncmap-203ENSMUST00000105858 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Cux1P53564 Gm42731-201ENSMUST00000201839 1641 ntBASIC16.26■□□□□ 0.19
Cux1P53564 Dpm1-202ENSMUST00000109193 1076 ntTSL 5 BASIC16.26■□□□□ 0.19
Cux1P53564 Mtcp1-202ENSMUST00000114081 980 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
Cux1P53564 Eif4a-ps4-201ENSMUST00000122226 1218 ntBASIC16.26■□□□□ 0.19
Cux1P53564 Gm16581-201ENSMUST00000160730 991 ntBASIC16.26■□□□□ 0.19
Cux1P53564 Gm26957-201ENSMUST00000182645 977 ntBASIC16.26■□□□□ 0.19
Cux1P53564 Gm38004-201ENSMUST00000192972 357 ntBASIC16.26■□□□□ 0.19
Cux1P53564 AC156274.1-201ENSMUST00000219193 634 ntBASIC16.26■□□□□ 0.19
Cux1P53564 Gm36287-201ENSMUST00000223481 796 ntTSL 5 BASIC16.26■□□□□ 0.19
Cux1P53564 Gm8256-202ENSMUST00000227964 828 ntBASIC16.26■□□□□ 0.19
Cux1P53564 Gm7190-201ENSMUST00000118669 1452 ntBASIC16.26■□□□□ 0.19
Cux1P53564 Ttc23-203ENSMUST00000107471 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Cux1P53564 Hsd3b1-201ENSMUST00000029465 1663 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
Cux1P53564 AW549877-201ENSMUST00000046633 5076 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Cux1P53564 Pgbd5-206ENSMUST00000172566 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Cux1P53564 Fbxl12-203ENSMUST00000131128 4182 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Cux1P53564 Hectd1-202ENSMUST00000179265 9012 ntTSL 5 BASIC16.26■□□□□ 0.19
Cux1P53564 Usp3-205ENSMUST00000127569 5607 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Cux1P53564 Cd14-201ENSMUST00000061829 1572 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Cux1P53564 Vsx2-202ENSMUST00000169934 3249 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Cux1P53564 H2-M10.4-201ENSMUST00000057502 1410 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Cux1P53564 Rab14-201ENSMUST00000028238 3081 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Cux1P53564 Plxdc1-201ENSMUST00000017561 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Cux1P53564 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Cux1P53564 Gm42962-201ENSMUST00000201966 2325 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Cux1P53564 Gm12221-201ENSMUST00000125096 1131 ntBASIC16.25■□□□□ 0.19
Cux1P53564 Piga-204ENSMUST00000133813 1086 ntTSL 5 BASIC16.25■□□□□ 0.19
Cux1P53564 Rpl17-ps11-201ENSMUST00000161946 729 ntBASIC16.25■□□□□ 0.19
Cux1P53564 Gm26611-201ENSMUST00000181449 785 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Cux1P53564 Gm2021-201ENSMUST00000190623 464 ntBASIC16.25■□□□□ 0.19
Cux1P53564 Gm7924-201ENSMUST00000203975 785 ntBASIC16.25■□□□□ 0.19
Cux1P53564 Gm3137-201ENSMUST00000218177 620 ntTSL 3 BASIC16.25■□□□□ 0.19
Cux1P53564 Gm32296-201ENSMUST00000220590 1057 ntTSL 3 BASIC16.25■□□□□ 0.19
Cux1P53564 4930547H16Rik-201ENSMUST00000222281 907 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Cux1P53564 Cdkn3-201ENSMUST00000067426 917 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Cux1P53564 Nop2-201ENSMUST00000044200 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Cux1P53564 Slc6a1-201ENSMUST00000032454 4302 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Cux1P53564 Bptf-203ENSMUST00000106763 12036 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Cux1P53564 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Cux1P53564 Myh3-203ENSMUST00000165221 5994 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Cux1P53564 Pabpc5-202ENSMUST00000113366 2243 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Cux1P53564 Celf2-224ENSMUST00000182879 2223 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Cux1P53564 Gm43963-201ENSMUST00000203466 2488 ntBASIC16.25■□□□□ 0.19
Cux1P53564 Oas1d-201ENSMUST00000044224 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Cux1P53564 Mbtps2-203ENSMUST00000112522 3891 ntTSL 2 BASIC16.25■□□□□ 0.19
Cux1P53564 Mbtps2-208ENSMUST00000179062 3890 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
Cux1P53564 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
Cux1P53564 4931428F04Rik-201ENSMUST00000014981 3492 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Cux1P53564 Ifnlr1-201ENSMUST00000074408 4182 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Cux1P53564 Cyp2b13-201ENSMUST00000005669 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Cux1P53564 Gm12462-201ENSMUST00000140826 3056 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Cux1P53564 Snrk-203ENSMUST00000120173 4758 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Cux1P53564 Rab7b-201ENSMUST00000064664 1672 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Cux1P53564 Zfp335-201ENSMUST00000041361 4587 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Cux1P53564 Gm7001-201ENSMUST00000219384 1465 ntBASIC16.25■□□□□ 0.19
Cux1P53564 L3mbtl1-201ENSMUST00000035751 2724 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Cux1P53564 Fam110b-201ENSMUST00000054857 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Cux1P53564 Far2-201ENSMUST00000032443 3480 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Cux1P53564 Fbxo40-202ENSMUST00000114806 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Cux1P53564 Zfp42-201ENSMUST00000082120 1772 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Cux1P53564 Dtymk-203ENSMUST00000112893 1040 ntTSL 2 BASIC16.24■□□□□ 0.19
Cux1P53564 Gm9117-201ENSMUST00000177735 1098 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
Cux1P53564 Gm21083-201ENSMUST00000188807 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Cux1P53564 Crip1-205ENSMUST00000199089 509 ntTSL 3 BASIC16.24■□□□□ 0.19
Cux1P53564 Gm44716-201ENSMUST00000209007 710 ntBASIC16.24■□□□□ 0.19
Cux1P53564 Pcbd1-202ENSMUST00000218005 361 ntTSL 3 BASIC16.24■□□□□ 0.19
Cux1P53564 Gm46376-201ENSMUST00000222653 654 ntTSL 3 BASIC16.24■□□□□ 0.19
Cux1P53564 CT009550.1-201ENSMUST00000225750 864 ntBASIC16.24■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 40.4 ms