Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Gm8557-201ENSMUST00000220777 475 ntBASIC10.24□□□□□ -0.77
Cdx2P43241 Gm1000-202ENSMUST00000222329 757 ntTSL 5 BASIC10.24□□□□□ -0.77
Cdx2P43241 Ipo4-201ENSMUST00000047131 3846 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdx2P43241 Pbp2-201ENSMUST00000050471 1279 ntAPPRIS P1 BASIC10.24□□□□□ -0.77
Cdx2P43241 Tas2r135-201ENSMUST00000070178 1093 ntAPPRIS P1 BASIC10.24□□□□□ -0.77
Cdx2P43241 Zfp868-201ENSMUST00000074982 1269 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdx2P43241 Gm25125-201ENSMUST00000083340 136 ntBASIC10.24□□□□□ -0.77
Cdx2P43241 Gm10581-201ENSMUST00000097986 231 ntBASIC10.24□□□□□ -0.77
Cdx2P43241 Trim23-203ENSMUST00000069187 3546 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Cdx2P43241 Ptpn21-202ENSMUST00000170188 5562 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdx2P43241 Asgr1-202ENSMUST00000092959 1308 ntAPPRIS P3 TSL 2 BASIC10.24□□□□□ -0.77
Cdx2P43241 Gm43622-201ENSMUST00000200140 2019 ntBASIC10.24□□□□□ -0.77
Cdx2P43241 Nars2-201ENSMUST00000044466 3778 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdx2P43241 Cfi-201ENSMUST00000077918 2079 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdx2P43241 Rfx1-201ENSMUST00000005600 4172 ntAPPRIS P2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdx2P43241 Ano4-202ENSMUST00000181976 1410 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Cdx2P43241 4833439L19Rik-208ENSMUST00000153065 2502 ntTSL 5 BASIC10.24□□□□□ -0.77
Cdx2P43241 Smg6-201ENSMUST00000045281 5848 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdx2P43241 Cttn-201ENSMUST00000033407 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx2P43241 Stau2-202ENSMUST00000054668 2907 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
Cdx2P43241 Atp5s-201ENSMUST00000021372 1485 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx2P43241 S100pbp-203ENSMUST00000106059 4084 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx2P43241 Siglec1-202ENSMUST00000110226 1861 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx2P43241 4932438H23Rik-201ENSMUST00000035689 2684 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx2P43241 Igfbp4-201ENSMUST00000017637 3831 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx2P43241 Eif5a2-201ENSMUST00000060500 5027 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx2P43241 Pabpc4-204ENSMUST00000106243 3111 ntAPPRIS ALT1 TSL 5 BASIC10.23□□□□□ -0.77
Cdx2P43241 Gstcd-201ENSMUST00000029651 3503 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx2P43241 Map3k12-208ENSMUST00000171565 4318 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx2P43241 Krt33b-201ENSMUST00000073890 1581 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx2P43241 Olfr463-203ENSMUST00000217095 1977 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
Cdx2P43241 Tfdp2-205ENSMUST00000179416 2408 ntAPPRIS P3 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx2P43241 Lmbr1-201ENSMUST00000055195 4926 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx2P43241 Gm37931-201ENSMUST00000194686 2866 ntBASIC10.23□□□□□ -0.77
Cdx2P43241 Lrrn1-201ENSMUST00000049285 3700 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx2P43241 Acsm1-201ENSMUST00000047929 2083 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx2P43241 2810407A14Rik-201ENSMUST00000069809 1699 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx2P43241 Arhgef9-206ENSMUST00000113884 3784 ntTSL 5 BASIC10.23□□□□□ -0.77
Cdx2P43241 Ccdc32-203ENSMUST00000110834 828 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx2P43241 Lypla1-202ENSMUST00000115529 930 ntTSL 2 BASIC10.23□□□□□ -0.77
Cdx2P43241 Gm13777-201ENSMUST00000118208 345 ntBASIC10.23□□□□□ -0.77
Cdx2P43241 Gm12345-201ENSMUST00000119288 898 ntBASIC10.23□□□□□ -0.77
Cdx2P43241 Gm45591-201ENSMUST00000129058 843 ntTSL 3 BASIC10.23□□□□□ -0.77
Cdx2P43241 Gm15839-201ENSMUST00000138684 612 ntTSL 3 BASIC10.23□□□□□ -0.77
Cdx2P43241 Pla2g1b-204ENSMUST00000145785 419 ntTSL 5 BASIC10.23□□□□□ -0.77
Cdx2P43241 2010204K13Rik-203ENSMUST00000150671 885 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx2P43241 Gm16587-201ENSMUST00000161943 863 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx2P43241 Rab11a-204ENSMUST00000167569 726 ntTSL 3 BASIC10.23□□□□□ -0.77
Cdx2P43241 H2al1e-201ENSMUST00000178979 494 ntAPPRIS P1 BASIC10.23□□□□□ -0.77
Cdx2P43241 Gm26750-201ENSMUST00000181718 711 ntTSL 5 BASIC10.23□□□□□ -0.77
Cdx2P43241 H2al1b-201ENSMUST00000189531 495 ntAPPRIS P1 BASIC10.23□□□□□ -0.77
Cdx2P43241 Gm18182-201ENSMUST00000191380 1251 ntBASIC10.23□□□□□ -0.77
Cdx2P43241 Gm33570-201ENSMUST00000207608 1254 ntTSL 5 BASIC10.23□□□□□ -0.77
Cdx2P43241 Fut1-202ENSMUST00000209379 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx2P43241 AC139155.1-201ENSMUST00000226043 444 ntBASIC10.23□□□□□ -0.77
Cdx2P43241 2010001K21Rik-201ENSMUST00000060680 519 ntBASIC10.23□□□□□ -0.77
Cdx2P43241 Cux1-204ENSMUST00000175975 10945 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx2P43241 Lbh-201ENSMUST00000024857 3064 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx2P43241 Vezt-202ENSMUST00000118077 2223 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx2P43241 Csnk1a1-204ENSMUST00000165123 4083 ntAPPRIS P2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx2P43241 Ncf1-202ENSMUST00000111275 2721 ntAPPRIS P3 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx2P43241 Mthfd1l-202ENSMUST00000117291 3669 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx2P43241 Ebf2-202ENSMUST00000176029 2784 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx2P43241 Kcnh6-202ENSMUST00000106903 2816 ntTSL 5 BASIC10.23□□□□□ -0.77
Cdx2P43241 Emilin1-201ENSMUST00000031055 3852 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx2P43241 Anapc4-201ENSMUST00000031072 3854 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx2P43241 Gas7-202ENSMUST00000108680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx2P43241 Nfe2l1-211ENSMUST00000167149 4596 ntAPPRIS P3 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx2P43241 Gpr17-201ENSMUST00000064016 5195 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx2P43241 Gm38034-201ENSMUST00000193915 2069 ntBASIC10.22□□□□□ -0.77
Cdx2P43241 C530043K16Rik-201ENSMUST00000201865 3109 ntBASIC10.22□□□□□ -0.77
Cdx2P43241 Nrg1-202ENSMUST00000207417 3138 ntAPPRIS ALT2 TSL 5 BASIC10.22□□□□□ -0.77
Cdx2P43241 Mroh5-202ENSMUST00000110021 2145 ntAPPRIS ALT2 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx2P43241 Sirt2-208ENSMUST00000155327 2117 ntAPPRIS ALT2 TSL 5 BASIC10.22□□□□□ -0.77
Cdx2P43241 Bach1-201ENSMUST00000026703 5867 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx2P43241 Gm45663-201ENSMUST00000210429 1632 ntBASIC10.22□□□□□ -0.77
Cdx2P43241 Agxt2-204ENSMUST00000110542 2198 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx2P43241 Ptprt-203ENSMUST00000109443 12112 ntAPPRIS ALT2 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx2P43241 Pak6-201ENSMUST00000099557 4411 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx2P43241 Syt11-203ENSMUST00000107505 5020 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx2P43241 Mcm2-201ENSMUST00000058011 3371 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx2P43241 Rfesd-201ENSMUST00000050997 2807 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx2P43241 Drc7-201ENSMUST00000058479 2832 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx2P43241 Adgre5-203ENSMUST00000109802 2867 ntAPPRIS ALT2 TSL 5 BASIC10.22□□□□□ -0.77
Cdx2P43241 Aplp2-209ENSMUST00000217641 3462 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx2P43241 Hexim1-201ENSMUST00000053063 3495 ntAPPRIS P1 BASIC10.22□□□□□ -0.77
Cdx2P43241 Foxp1-221ENSMUST00000176632 2336 ntAPPRIS ALT2 TSL 5 BASIC10.22□□□□□ -0.77
Cdx2P43241 Foxp1-222ENSMUST00000176850 2339 ntAPPRIS ALT1 TSL 5 BASIC10.22□□□□□ -0.77
Cdx2P43241 Nlrx1-202ENSMUST00000168499 3579 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx2P43241 Clasp1-216ENSMUST00000189738 5373 ntAPPRIS ALT2 TSL 5 BASIC10.22□□□□□ -0.77
Cdx2P43241 Kcnk18-201ENSMUST00000065204 3032 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx2P43241 Ank2-214ENSMUST00000182547 2428 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx2P43241 Dglucy-202ENSMUST00000110069 3058 ntAPPRIS P2 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx2P43241 Ttpa-201ENSMUST00000098244 3053 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx2P43241 Hspa2-201ENSMUST00000080449 2524 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx2P43241 Mir598-201ENSMUST00000102094 79 ntBASIC10.22□□□□□ -0.77
Cdx2P43241 Mir291b-201ENSMUST00000104838 79 ntBASIC10.22□□□□□ -0.77
Cdx2P43241 Wfdc3-202ENSMUST00000109328 726 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx2P43241 Gm7861-201ENSMUST00000110749 506 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx2P43241 Gm7849-201ENSMUST00000110752 488 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Retrieved 100 of 76,532 protein–RNA pairs in 41.1 ms