Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Tmem220-202ENSMUST00000079077 1147 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
Chmp6P0C0A3 Ap1b1-201ENSMUST00000009234 4085 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Chmp6P0C0A3 Atp1a2-202ENSMUST00000097464 3186 ntTSL 5 BASIC11.73□□□□□ -0.53
Chmp6P0C0A3 Bod1l-201ENSMUST00000050556 10540 ntAPPRIS P3 TSL 5 BASIC11.73□□□□□ -0.53
Chmp6P0C0A3 Dnmt1-202ENSMUST00000177754 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Chmp6P0C0A3 Zscan12-203ENSMUST00000225545 4405 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
Chmp6P0C0A3 Smok3a-201ENSMUST00000085886 2723 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Chmp6P0C0A3 Camk1g-201ENSMUST00000016323 2469 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Slc6a5-203ENSMUST00000207753 6966 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Slc25a44-203ENSMUST00000193433 3429 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Ltbp1-203ENSMUST00000112516 5140 ntAPPRIS P3 TSL 5 BASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Abcf1-201ENSMUST00000043757 3161 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Bdh1-203ENSMUST00000115227 3122 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Pax6-225ENSMUST00000167211 2814 ntAPPRIS P3 TSL 5 BASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Rtbdn-202ENSMUST00000109740 1363 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Ikzf2-204ENSMUST00000188110 1365 ntTSL 5 BASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Ikzf2-208ENSMUST00000190855 1359 ntTSL 5 BASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Chac2-202ENSMUST00000101394 1315 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Sla2-202ENSMUST00000109561 2634 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Tram2-201ENSMUST00000037998 6492 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Vsir-202ENSMUST00000105459 1290 ntTSL 5 BASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Snord23-201ENSMUST00000116828 109 ntBASIC11.72□□□□□ -0.53
Chmp6P0C0A3 1700071K01Rik-201ENSMUST00000117522 819 ntBASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Gm11422-201ENSMUST00000118925 1103 ntBASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Rhox3d-ps-201ENSMUST00000119181 825 ntBASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Gm8876-201ENSMUST00000120768 1122 ntBASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Gm11952-201ENSMUST00000121172 821 ntBASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Utp23-202ENSMUST00000136129 779 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Chmp6P0C0A3 4631405J19Rik-204ENSMUST00000145926 936 ntTSL 3 BASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Mfsd11-212ENSMUST00000153084 1194 ntTSL 5 BASIC11.72□□□□□ -0.53
Chmp6P0C0A3 4930405O22Rik-201ENSMUST00000164605 954 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Mocs2-203ENSMUST00000164737 745 ntTSL 3 BASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Gm20536-201ENSMUST00000172588 406 ntTSL 3 BASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Gm21964-201ENSMUST00000178785 936 ntTSL 5 BASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Gm45338-201ENSMUST00000209198 820 ntTSL 5 BASIC11.72□□□□□ -0.53
Chmp6P0C0A3 AC120394.2-201ENSMUST00000213905 702 ntTSL 5 BASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Gm3619-201ENSMUST00000219947 775 ntBASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Gm18968-201ENSMUST00000221319 862 ntBASIC11.72□□□□□ -0.53
Chmp6P0C0A3 AC134793.1-202ENSMUST00000227444 803 ntBASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Ddr1-201ENSMUST00000003628 3802 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Gm10135-201ENSMUST00000043711 252 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Chmp6P0C0A3 n-R5s185-201ENSMUST00000083953 119 ntBASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Eya2-201ENSMUST00000063433 2460 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Nf2-202ENSMUST00000056290 2394 ntAPPRIS ALT1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Gm19040-201ENSMUST00000203280 4726 ntBASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Fam222b-203ENSMUST00000155571 3358 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chmp6P0C0A3 AI593442-201ENSMUST00000098768 5615 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Aktip-203ENSMUST00000120349 2153 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Nucks1-201ENSMUST00000062264 5998 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Hyal2-206ENSMUST00000195681 2968 ntBASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Specc1l-201ENSMUST00000040105 5928 ntTSL 5 BASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Slc38a4-202ENSMUST00000166223 1908 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Trim16-202ENSMUST00000072639 1929 ntTSL 2 BASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Slc45a4-207ENSMUST00000151288 7509 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Ankub1-202ENSMUST00000197088 1854 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Zdbf2-201ENSMUST00000029025 12112 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Setd1b-201ENSMUST00000056053 7362 ntAPPRIS P2 TSL 5 BASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Sptbn5-204ENSMUST00000156159 3625 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Pou2f1-206ENSMUST00000111429 2679 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Fbxl18-202ENSMUST00000110766 7857 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chmp6P0C0A3 Atp6v0a4-202ENSMUST00000114908 3307 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Chmp6P0C0A3 Ldb3-202ENSMUST00000022328 2468 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Chmp6P0C0A3 Nod1-202ENSMUST00000168172 4064 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Chmp6P0C0A3 Lexm-202ENSMUST00000106788 1569 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Chmp6P0C0A3 Slc18a1-201ENSMUST00000037478 3115 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Chmp6P0C0A3 Tank-204ENSMUST00000112501 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Chmp6P0C0A3 Mphosph10-201ENSMUST00000032735 2248 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Chmp6P0C0A3 Dopey2-201ENSMUST00000045004 7319 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Chmp6P0C0A3 Gm3765-201ENSMUST00000130985 1447 ntBASIC11.71□□□□□ -0.53
Chmp6P0C0A3 H2-T3-201ENSMUST00000025312 2114 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Chmp6P0C0A3 Tasp1-202ENSMUST00000099304 2127 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Chmp6P0C0A3 Fbrs-201ENSMUST00000048896 2650 ntAPPRIS P2 TSL 5 BASIC11.71□□□□□ -0.53
Chmp6P0C0A3 Myo1c-203ENSMUST00000102505 4652 ntAPPRIS ALT1 TSL 5 BASIC11.71□□□□□ -0.53
Chmp6P0C0A3 Ndufaf1-203ENSMUST00000110802 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Chmp6P0C0A3 Gm31816-202ENSMUST00000209591 1332 ntTSL 5 BASIC11.71□□□□□ -0.53
Chmp6P0C0A3 Srpk3-201ENSMUST00000002081 1981 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Chmp6P0C0A3 Psd-202ENSMUST00000096029 3903 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
Chmp6P0C0A3 Gm12296-201ENSMUST00000144922 3220 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Chmp6P0C0A3 Gm12179-201ENSMUST00000118344 1272 ntBASIC11.71□□□□□ -0.53
Chmp6P0C0A3 Gm13668-201ENSMUST00000119237 1001 ntBASIC11.71□□□□□ -0.53
Chmp6P0C0A3 Gm12791-201ENSMUST00000120788 655 ntBASIC11.71□□□□□ -0.53
Chmp6P0C0A3 Gm12705-201ENSMUST00000129460 872 ntTSL 2 BASIC11.71□□□□□ -0.53
Chmp6P0C0A3 A230006K03Rik-202ENSMUST00000154958 901 ntTSL 5 BASIC11.71□□□□□ -0.53
Chmp6P0C0A3 Gm17221-201ENSMUST00000163909 481 ntBASIC11.71□□□□□ -0.53
Chmp6P0C0A3 Gm17073-201ENSMUST00000168069 556 ntBASIC11.71□□□□□ -0.53
Chmp6P0C0A3 Dusp3-207ENSMUST00000176261 496 ntTSL 3 BASIC11.71□□□□□ -0.53
Chmp6P0C0A3 Gm19013-201ENSMUST00000183895 1222 ntBASIC11.71□□□□□ -0.53
Chmp6P0C0A3 Gm19014-201ENSMUST00000184828 1189 ntBASIC11.71□□□□□ -0.53
Chmp6P0C0A3 A930036K24Rik-201ENSMUST00000194146 1200 ntBASIC11.71□□□□□ -0.53
Chmp6P0C0A3 Gm38324-201ENSMUST00000194390 411 ntTSL 3 BASIC11.71□□□□□ -0.53
Chmp6P0C0A3 Gm10752-201ENSMUST00000218348 729 ntBASIC11.71□□□□□ -0.53
Chmp6P0C0A3 Gm36074-201ENSMUST00000221383 591 ntTSL 5 BASIC11.71□□□□□ -0.53
Chmp6P0C0A3 AC115304.2-201ENSMUST00000226399 332 ntBASIC11.71□□□□□ -0.53
Chmp6P0C0A3 CT025618.1-203ENSMUST00000227008 589 ntBASIC11.71□□□□□ -0.53
Chmp6P0C0A3 Pgap2-201ENSMUST00000033292 1201 ntAPPRIS ALT1 TSL 5 BASIC11.71□□□□□ -0.53
Chmp6P0C0A3 Cmtm2a-201ENSMUST00000034344 1081 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Chmp6P0C0A3 Gm16380-201ENSMUST00000077997 478 ntBASIC11.71□□□□□ -0.53
Chmp6P0C0A3 Snu13-202ENSMUST00000080622 1283 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Chmp6P0C0A3 Shroom2-201ENSMUST00000062317 6997 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Chmp6P0C0A3 Gm37031-201ENSMUST00000195487 2530 ntBASIC11.71□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 56.1 ms