Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 AC132881.1-201ENSMUST00000223780 1062 ntBASIC16.3■□□□□ 0.2
Cux1P53564 CT025618.1-201ENSMUST00000227409 1279 ntBASIC16.3■□□□□ 0.2
Cux1P53564 Phf5a-201ENSMUST00000023117 864 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cux1P53564 Gm4763-201ENSMUST00000081657 882 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cux1P53564 Gm4883-201ENSMUST00000085702 528 ntBASIC16.3■□□□□ 0.2
Cux1P53564 Zfp263-201ENSMUST00000023176 3241 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cux1P53564 Gm26823-201ENSMUST00000181425 2361 ntTSL 5 BASIC16.3■□□□□ 0.2
Cux1P53564 Fam180a-201ENSMUST00000051176 1606 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cux1P53564 Eif3j1-201ENSMUST00000028668 5413 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cux1P53564 Gm39464-201ENSMUST00000214091 2169 ntTSL 5 BASIC16.3■□□□□ 0.2
Cux1P53564 Zfyve26-203ENSMUST00000218377 2726 ntTSL 5 BASIC16.3■□□□□ 0.2
Cux1P53564 Epb41-203ENSMUST00000084253 5141 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cux1P53564 Cers3-201ENSMUST00000066475 3250 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Cux1P53564 Pcdhb9-201ENSMUST00000057228 3055 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Cux1P53564 Zfp41-204ENSMUST00000161785 3540 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cux1P53564 Mmd2-201ENSMUST00000037048 3317 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cux1P53564 C030037D09Rik-203ENSMUST00000138007 3220 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Cux1P53564 Asap1-201ENSMUST00000023008 4580 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Cux1P53564 Hdac9-208ENSMUST00000211107 1683 ntTSL 5 BASIC16.3■□□□□ 0.2
Cux1P53564 Gm9035-201ENSMUST00000218318 1697 ntBASIC16.3■□□□□ 0.2
Cux1P53564 Adh1-201ENSMUST00000004232 1492 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cux1P53564 Slc4a8-204ENSMUST00000162049 3532 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cux1P53564 Ifitm7-202ENSMUST00000178021 1823 ntAPPRIS ALT2 BASIC16.3■□□□□ 0.2
Cux1P53564 Brat1-201ENSMUST00000041588 3333 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cux1P53564 Bpifb2-201ENSMUST00000028983 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cux1P53564 Ighv8-6-201ENSMUST00000103524 301 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Cux1P53564 Gm3404-201ENSMUST00000110596 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cux1P53564 Gm8809-201ENSMUST00000119367 743 ntBASIC16.29■□□□□ 0.2
Cux1P53564 Gm11824-201ENSMUST00000120191 846 ntBASIC16.29■□□□□ 0.2
Cux1P53564 Defa-ps17-201ENSMUST00000121849 171 ntBASIC16.29■□□□□ 0.2
Cux1P53564 Speer4f2-201ENSMUST00000166086 1278 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Cux1P53564 Gm2663-201ENSMUST00000166306 862 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cux1P53564 Gm28809-201ENSMUST00000187542 782 ntTSL 5 BASIC16.29■□□□□ 0.2
Cux1P53564 Rps27-202ENSMUST00000195998 458 ntTSL 5 BASIC16.29■□□□□ 0.2
Cux1P53564 Gm32743-201ENSMUST00000214196 594 ntTSL 3 BASIC16.29■□□□□ 0.2
Cux1P53564 Gm12248-203ENSMUST00000219877 1160 ntAPPRIS P5 TSL 5 BASIC16.29■□□□□ 0.2
Cux1P53564 4933425M03Rik-201ENSMUST00000195991 1544 ntBASIC16.29■□□□□ 0.2
Cux1P53564 Araf-201ENSMUST00000001155 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cux1P53564 Ppfia4-205ENSMUST00000189361 5238 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Cux1P53564 Cdc25a-204ENSMUST00000198308 2880 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Cux1P53564 Olfr30-202ENSMUST00000215691 2404 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Cux1P53564 H2-T3-204ENSMUST00000102675 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cux1P53564 Camsap3-202ENSMUST00000171962 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cux1P53564 Rnf214-208ENSMUST00000161187 2847 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cux1P53564 Urod-201ENSMUST00000030446 1489 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cux1P53564 Tcof1-202ENSMUST00000175934 4595 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
Cux1P53564 Tfr2-206ENSMUST00000198783 2973 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cux1P53564 Nin-204ENSMUST00000169074 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cux1P53564 Gm44664-201ENSMUST00000206841 1786 ntBASIC16.29■□□□□ 0.2
Cux1P53564 Tmprss6-201ENSMUST00000017086 3191 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cux1P53564 Pcgf5-202ENSMUST00000071267 1508 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Cux1P53564 Arcn1-201ENSMUST00000034607 4072 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cux1P53564 Gys1-206ENSMUST00000211150 2681 ntTSL 5 BASIC16.29■□□□□ 0.2
Cux1P53564 Gm25561-201ENSMUST00000104607 125 ntBASIC16.29■□□□□ 0.2
Cux1P53564 Ppp1r2-ps4-201ENSMUST00000112182 633 ntBASIC16.29■□□□□ 0.2
Cux1P53564 Rhox4a-201ENSMUST00000115194 925 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cux1P53564 Dppa3-ps-201ENSMUST00000116499 451 ntBASIC16.29■□□□□ 0.2
Cux1P53564 Mir1190-201ENSMUST00000116925 96 ntBASIC16.29■□□□□ 0.2
Cux1P53564 Gm26810-201ENSMUST00000181153 1106 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Cux1P53564 Bpifa1-201ENSMUST00000028985 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cux1P53564 Proca1-202ENSMUST00000078099 1254 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cux1P53564 Olfr128-201ENSMUST00000080231 1050 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Cux1P53564 1110017D15Rik-202ENSMUST00000095126 884 ntTSL 3 BASIC16.29■□□□□ 0.2
Cux1P53564 Vmn1r212-201ENSMUST00000095960 1164 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Cux1P53564 Nr2c1-202ENSMUST00000099343 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cux1P53564 Fkbp15-204ENSMUST00000107461 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cux1P53564 Gm7061-201ENSMUST00000118127 1416 ntBASIC16.29■□□□□ 0.2
Cux1P53564 Toe1-201ENSMUST00000030451 2090 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cux1P53564 Atl2-202ENSMUST00000112437 3371 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Cux1P53564 Gm16429-202ENSMUST00000201400 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cux1P53564 Gm7971-201ENSMUST00000086950 1848 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Cux1P53564 Mthfd1l-201ENSMUST00000043735 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cux1P53564 Chst10-205ENSMUST00000193441 4999 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Cux1P53564 Rnf220-201ENSMUST00000030439 3029 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cux1P53564 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cux1P53564 Mlxip-201ENSMUST00000068237 7303 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cux1P53564 Tcf4-238ENSMUST00000201631 2660 ntTSL 5 BASIC16.28■□□□□ 0.2
Cux1P53564 Gm45740-201ENSMUST00000212103 2003 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Cux1P53564 Gm16439-201ENSMUST00000100687 564 ntBASIC16.28■□□□□ 0.2
Cux1P53564 Palm2-201ENSMUST00000102904 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cux1P53564 Plxnb2-202ENSMUST00000109331 6377 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Cux1P53564 Gm6141-201ENSMUST00000117181 695 ntBASIC16.28■□□□□ 0.2
Cux1P53564 Gm23916-201ENSMUST00000158484 399 ntBASIC16.28■□□□□ 0.2
Cux1P53564 Gm16574-201ENSMUST00000159301 745 ntBASIC16.28■□□□□ 0.2
Cux1P53564 Tdrkh-203ENSMUST00000196386 1050 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Cux1P53564 Gm44709-201ENSMUST00000207649 448 ntTSL 5 BASIC16.28■□□□□ 0.2
Cux1P53564 3830406C13Rik-205ENSMUST00000223702 900 ntBASIC16.28■□□□□ 0.2
Cux1P53564 Gm26205-201ENSMUST00000082907 134 ntBASIC16.28■□□□□ 0.2
Cux1P53564 Olfr169-201ENSMUST00000090062 942 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Cux1P53564 Gsg1-204ENSMUST00000111911 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cux1P53564 Cpvl-201ENSMUST00000166545 1597 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cux1P53564 Pax5-202ENSMUST00000102932 1460 ntTSL 5 BASIC16.28■□□□□ 0.2
Cux1P53564 Adam22-207ENSMUST00000115388 9161 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Cux1P53564 Prrx1-204ENSMUST00000174397 6527 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Cux1P53564 Anks1b-214ENSMUST00000182356 7561 ntTSL 5 BASIC16.27■□□□□ 0.2
Cux1P53564 Gm45728-201ENSMUST00000211475 2979 ntBASIC16.27■□□□□ 0.2
Cux1P53564 Ero1lb-201ENSMUST00000071973 4239 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cux1P53564 Olfr1344-202ENSMUST00000218906 2590 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
Cux1P53564 Tulp2-210ENSMUST00000210868 1664 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Cux1P53564 Wdr59-201ENSMUST00000034437 4896 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 44.9 ms