Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 4930413E15Rik-201ENSMUST00000202500 1290 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Rfx3P48381 Cdipt-202ENSMUST00000205830 805 ntTSL 2 BASIC9.73□□□□□ -0.85
Rfx3P48381 Timm9-201ENSMUST00000021486 794 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Rfx3P48381 Gm34868-201ENSMUST00000218341 530 ntTSL 3 BASIC9.73□□□□□ -0.85
Rfx3P48381 AC125486.1-201ENSMUST00000218701 320 ntBASIC9.73□□□□□ -0.85
Rfx3P48381 Gm4797-201ENSMUST00000219075 1283 ntBASIC9.73□□□□□ -0.85
Rfx3P48381 CT009718.3-201ENSMUST00000221116 367 ntBASIC9.73□□□□□ -0.85
Rfx3P48381 CT010506.1-201ENSMUST00000223673 349 ntBASIC9.73□□□□□ -0.85
Rfx3P48381 Acsbg1-201ENSMUST00000034822 2880 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Rfx3P48381 Zfp940-202ENSMUST00000108223 2560 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Rfx3P48381 Filip1l-202ENSMUST00000159414 3253 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Rfx3P48381 Rtn4ip1-201ENSMUST00000054418 2981 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Rfx3P48381 A930007I19Rik-201ENSMUST00000180737 2319 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Rfx3P48381 Ap1m2-201ENSMUST00000003397 1706 ntAPPRIS P3 TSL 1 (best) BASIC9.73□□□□□ -0.85
Rfx3P48381 Gm32511-202ENSMUST00000217021 2069 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Rfx3P48381 Usp44-202ENSMUST00000216224 2449 ntAPPRIS P1 TSL 5 BASIC9.73□□□□□ -0.85
Rfx3P48381 Cyp2a22-201ENSMUST00000170227 1796 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Rfx3P48381 Kmt2a-202ENSMUST00000114689 16470 ntAPPRIS ALT2 TSL 5 BASIC9.73□□□□□ -0.85
Rfx3P48381 Srp54a-207ENSMUST00000110708 3646 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Rfx3P48381 Bicd1-203ENSMUST00000111513 4049 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Rfx3P48381 Srsf5-202ENSMUST00000110351 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC9.72□□□□□ -0.85
Rfx3P48381 Spdye4a-203ENSMUST00000195900 1496 ntAPPRIS ALT2 TSL 5 BASIC9.72□□□□□ -0.85
Rfx3P48381 Prdm16-205ENSMUST00000105637 8595 ntAPPRIS ALT2 TSL 1 (best) BASIC9.72□□□□□ -0.85
Rfx3P48381 Prdm16-201ENSMUST00000030902 8598 ntAPPRIS P3 TSL 1 (best) BASIC9.72□□□□□ -0.85
Rfx3P48381 N4bp2l1-205ENSMUST00000202031 1864 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Rfx3P48381 4930555B11Rik-201ENSMUST00000123210 1533 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Rfx3P48381 Gbp3-201ENSMUST00000029935 2681 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Rfx3P48381 Bco1-201ENSMUST00000034308 2338 ntAPPRIS P3 TSL 1 (best) BASIC9.72□□□□□ -0.85
Rfx3P48381 Slc25a25-202ENSMUST00000052119 3529 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Rfx3P48381 Aplp2-202ENSMUST00000079758 3504 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Rfx3P48381 Gm45699-201ENSMUST00000212838 1576 ntTSL 2 BASIC9.72□□□□□ -0.85
Rfx3P48381 Arhgap33-204ENSMUST00000207860 4396 ntAPPRIS P3 TSL 1 (best) BASIC9.72□□□□□ -0.85
Rfx3P48381 Prdm1-202ENSMUST00000105490 4025 ntAPPRIS P2 TSL 1 (best) BASIC9.72□□□□□ -0.85
Rfx3P48381 Gm45165-201ENSMUST00000207763 1631 ntBASIC9.72□□□□□ -0.85
Rfx3P48381 Nos3-202ENSMUST00000115090 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC9.72□□□□□ -0.85
Rfx3P48381 Doxl2-203ENSMUST00000184917 2468 ntAPPRIS P1 TSL 3 BASIC9.72□□□□□ -0.85
Rfx3P48381 Thbd-201ENSMUST00000099270 3723 ntAPPRIS P1 BASIC9.72□□□□□ -0.85
Rfx3P48381 Spata7-201ENSMUST00000048402 2052 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Rfx3P48381 Lpxn-201ENSMUST00000025601 1675 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Rfx3P48381 Igkv3-10-201ENSMUST00000103397 356 ntAPPRIS ALT2 BASIC9.72□□□□□ -0.85
Rfx3P48381 Nudt6-203ENSMUST00000108117 879 ntTSL 5 BASIC9.72□□□□□ -0.85
Rfx3P48381 Gm9133-201ENSMUST00000118289 540 ntBASIC9.72□□□□□ -0.85
Rfx3P48381 Gm16166-201ENSMUST00000118291 787 ntBASIC9.72□□□□□ -0.85
Rfx3P48381 Gm15131-201ENSMUST00000119124 595 ntBASIC9.72□□□□□ -0.85
Rfx3P48381 Odf4-202ENSMUST00000125134 646 ntTSL 3 BASIC9.72□□□□□ -0.85
Rfx3P48381 1700003G13Rik-202ENSMUST00000131342 705 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Rfx3P48381 Gm15726-201ENSMUST00000144738 509 ntTSL 3 BASIC9.72□□□□□ -0.85
Rfx3P48381 Gm6485-201ENSMUST00000160676 439 ntBASIC9.72□□□□□ -0.85
Rfx3P48381 Gm7271-202ENSMUST00000191515 836 ntAPPRIS P1 TSL 5 BASIC9.72□□□□□ -0.85
Rfx3P48381 Dnajb6-212ENSMUST00000198694 505 ntTSL 3 BASIC9.72□□□□□ -0.85
Rfx3P48381 Gm38804-201ENSMUST00000203998 767 ntTSL 3 BASIC9.72□□□□□ -0.85
Rfx3P48381 Gm45118-201ENSMUST00000208928 825 ntBASIC9.72□□□□□ -0.85
Rfx3P48381 Nutf2-202ENSMUST00000212042 645 ntAPPRIS P1 TSL 3 BASIC9.72□□□□□ -0.85
Rfx3P48381 Gm17749-201ENSMUST00000216282 690 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Rfx3P48381 Pf4-201ENSMUST00000031320 588 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Rfx3P48381 Gm10702-201ENSMUST00000098929 1268 ntBASIC9.72□□□□□ -0.85
Rfx3P48381 Gm26686-201ENSMUST00000181951 3467 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Rfx3P48381 Catsper3-201ENSMUST00000021961 1330 ntAPPRIS ALT2 TSL 1 (best) BASIC9.72□□□□□ -0.85
Rfx3P48381 Foxh1-201ENSMUST00000037824 1306 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Rfx3P48381 Gm44445-201ENSMUST00000204075 2683 ntBASIC9.72□□□□□ -0.85
Rfx3P48381 Nfya-201ENSMUST00000046719 3645 ntAPPRIS ALT1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Rfx3P48381 Lrrc49-204ENSMUST00000114034 2779 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Rfx3P48381 Optc-201ENSMUST00000124051 1885 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Rfx3P48381 Pdcd10-205ENSMUST00000161137 1927 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Rfx3P48381 Nphs1-203ENSMUST00000126297 3877 ntAPPRIS ALT2 TSL 1 (best) BASIC9.72□□□□□ -0.85
Rfx3P48381 Muc13-201ENSMUST00000023520 2942 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Rfx3P48381 Olfr222-202ENSMUST00000214351 2474 ntAPPRIS P1 TSL 5 BASIC9.72□□□□□ -0.85
Rfx3P48381 Plekha7-207ENSMUST00000182511 4502 ntTSL 2 BASIC9.72□□□□□ -0.85
Rfx3P48381 Tcf4-203ENSMUST00000114977 3070 ntTSL 1 (best) BASIC9.71□□□□□ -0.85
Rfx3P48381 Gm4900-201ENSMUST00000222046 1628 ntBASIC9.71□□□□□ -0.85
Rfx3P48381 Armc2-201ENSMUST00000095729 4855 ntAPPRIS P1 TSL 5 BASIC9.71□□□□□ -0.85
Rfx3P48381 Elovl5-201ENSMUST00000034904 2782 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.85
Rfx3P48381 Zfp330-201ENSMUST00000034147 1675 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.85
Rfx3P48381 Ppp1r12a-205ENSMUST00000219263 3355 ntAPPRIS P1 TSL 5 BASIC9.71□□□□□ -0.85
Rfx3P48381 9530059O14Rik-201ENSMUST00000181107 3978 ntTSL 1 (best) BASIC9.71□□□□□ -0.85
Rfx3P48381 Capn3-206ENSMUST00000110721 2898 ntTSL 1 (best) BASIC9.71□□□□□ -0.85
Rfx3P48381 E330034L11Rik-201ENSMUST00000200640 1742 ntBASIC9.71□□□□□ -0.85
Rfx3P48381 Kirrel3-201ENSMUST00000045091 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC9.71□□□□□ -0.85
Rfx3P48381 Csrnp3-208ENSMUST00000176109 2958 ntAPPRIS ALT2 TSL 5 BASIC9.71□□□□□ -0.85
Rfx3P48381 Katnal2-208ENSMUST00000137498 1824 ntTSL 5 BASIC9.71□□□□□ -0.85
Rfx3P48381 Gm43375-201ENSMUST00000196705 2480 ntBASIC9.71□□□□□ -0.85
Rfx3P48381 Wdr60-201ENSMUST00000039349 3721 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.85
Rfx3P48381 Tfdp1-204ENSMUST00000209885 2511 ntAPPRIS P3 TSL 1 (best) BASIC9.71□□□□□ -0.85
Rfx3P48381 Eif2s2-201ENSMUST00000099173 2542 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.85
Rfx3P48381 Taf6l-202ENSMUST00000010249 848 ntTSL 1 (best) BASIC9.71□□□□□ -0.86
Rfx3P48381 Gm2000-201ENSMUST00000102782 445 ntAPPRIS P1 BASIC9.71□□□□□ -0.86
Rfx3P48381 Prdx1-202ENSMUST00000106470 877 ntAPPRIS P1 TSL 5 BASIC9.71□□□□□ -0.86
Rfx3P48381 AU015836-201ENSMUST00000120624 674 ntTSL 3 BASIC9.71□□□□□ -0.86
Rfx3P48381 Gm11789-203ENSMUST00000140645 737 ntTSL 2 BASIC9.71□□□□□ -0.86
Rfx3P48381 Nlrp5-ps-202ENSMUST00000173220 1294 ntBASIC9.71□□□□□ -0.86
Rfx3P48381 Gm17709-201ENSMUST00000174536 1096 ntBASIC9.71□□□□□ -0.86
Rfx3P48381 Ly6l-201ENSMUST00000177479 430 ntAPPRIS P1 TSL 5 BASIC9.71□□□□□ -0.86
Rfx3P48381 Stpg4-202ENSMUST00000186211 591 ntAPPRIS ALT2 TSL 2 BASIC9.71□□□□□ -0.86
Rfx3P48381 Gm38139-201ENSMUST00000195806 704 ntTSL 2 BASIC9.71□□□□□ -0.86
Rfx3P48381 Gm31479-201ENSMUST00000209936 522 ntTSL 3 BASIC9.71□□□□□ -0.86
Rfx3P48381 Gm6430-201ENSMUST00000054664 1248 ntBASIC9.71□□□□□ -0.86
Rfx3P48381 Flg2-201ENSMUST00000098884 7011 ntAPPRIS P1 TSL 5 BASIC9.71□□□□□ -0.86
Rfx3P48381 Cacna1f-201ENSMUST00000115725 6028 ntAPPRIS ALT2 TSL 5 BASIC9.71□□□□□ -0.86
Rfx3P48381 Wipf1-203ENSMUST00000102680 4032 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.86
Rfx3P48381 Anapc15-213ENSMUST00000178851 2797 ntTSL 2 BASIC9.71□□□□□ -0.86
Retrieved 100 of 76,532 protein–RNA pairs in 43 ms