Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Msh4Q99MT2 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Msh4Q99MT2 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Msh4Q99MT2 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Msh4Q99MT2 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
Msh4Q99MT2 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Msh4Q99MT2 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Msh4Q99MT2 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Msh4Q99MT2 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Msh4Q99MT2 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Msh4Q99MT2 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Msh4Q99MT2 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Msh4Q99MT2 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC19.41■□□□□ 0.7
Msh4Q99MT2 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Msh4Q99MT2 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC19.41■□□□□ 0.7
Msh4Q99MT2 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC19.41■□□□□ 0.7
Msh4Q99MT2 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Msh4Q99MT2 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC19.41■□□□□ 0.7
Msh4Q99MT2 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Msh4Q99MT2 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Msh4Q99MT2 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Msh4Q99MT2 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Msh4Q99MT2 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Msh4Q99MT2 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Msh4Q99MT2 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC19.4■□□□□ 0.7
Msh4Q99MT2 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Msh4Q99MT2 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
Msh4Q99MT2 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Msh4Q99MT2 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Msh4Q99MT2 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
Msh4Q99MT2 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Msh4Q99MT2 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Msh4Q99MT2 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Msh4Q99MT2 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Msh4Q99MT2 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC19.39■□□□□ 0.69
Msh4Q99MT2 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Msh4Q99MT2 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Msh4Q99MT2 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Msh4Q99MT2 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Msh4Q99MT2 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Msh4Q99MT2 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Msh4Q99MT2 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC19.38■□□□□ 0.69
Msh4Q99MT2 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC19.38■□□□□ 0.69
Msh4Q99MT2 AC140930.3-201ENSMUST00000222935 274 ntBASIC19.38■□□□□ 0.69
Msh4Q99MT2 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
Msh4Q99MT2 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Msh4Q99MT2 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Msh4Q99MT2 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Msh4Q99MT2 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Msh4Q99MT2 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Msh4Q99MT2 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
Msh4Q99MT2 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Msh4Q99MT2 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC19.37■□□□□ 0.69
Msh4Q99MT2 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Msh4Q99MT2 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Msh4Q99MT2 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Msh4Q99MT2 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Msh4Q99MT2 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Msh4Q99MT2 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC19.37■□□□□ 0.69
Msh4Q99MT2 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Msh4Q99MT2 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Msh4Q99MT2 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
Msh4Q99MT2 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC19.37■□□□□ 0.69
Msh4Q99MT2 Gm7143-201ENSMUST00000222811 859 ntBASIC19.37■□□□□ 0.69
Msh4Q99MT2 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Msh4Q99MT2 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Msh4Q99MT2 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Msh4Q99MT2 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Msh4Q99MT2 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Msh4Q99MT2 AC122428.2-201ENSMUST00000216321 1832 ntBASIC19.37■□□□□ 0.69
Msh4Q99MT2 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Msh4Q99MT2 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Msh4Q99MT2 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Msh4Q99MT2 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Msh4Q99MT2 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Msh4Q99MT2 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Msh4Q99MT2 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Msh4Q99MT2 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC19.36■□□□□ 0.69
Msh4Q99MT2 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC19.36■□□□□ 0.69
Msh4Q99MT2 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Msh4Q99MT2 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC19.36■□□□□ 0.69
Msh4Q99MT2 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC19.36■□□□□ 0.69
Msh4Q99MT2 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Msh4Q99MT2 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Msh4Q99MT2 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Msh4Q99MT2 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Msh4Q99MT2 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Msh4Q99MT2 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Msh4Q99MT2 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Msh4Q99MT2 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Msh4Q99MT2 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Msh4Q99MT2 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC19.35■□□□□ 0.69
Msh4Q99MT2 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Msh4Q99MT2 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Msh4Q99MT2 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Msh4Q99MT2 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Msh4Q99MT2 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Msh4Q99MT2 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Msh4Q99MT2 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Msh4Q99MT2 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC19.34■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 31.5 ms