Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ccdc28aQ8CEI3 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Ccdc28aQ8CEI3 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ccdc28aQ8CEI3 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC21.1■□□□□ 0.97
Ccdc28aQ8CEI3 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ccdc28aQ8CEI3 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ccdc28aQ8CEI3 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC21.1■□□□□ 0.97
Ccdc28aQ8CEI3 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ccdc28aQ8CEI3 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Ccdc28aQ8CEI3 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ccdc28aQ8CEI3 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Ccdc28aQ8CEI3 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ccdc28aQ8CEI3 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Ccdc28aQ8CEI3 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ccdc28aQ8CEI3 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC21.1■□□□□ 0.97
Ccdc28aQ8CEI3 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ccdc28aQ8CEI3 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Ccdc28aQ8CEI3 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ccdc28aQ8CEI3 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Ccdc28aQ8CEI3 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ccdc28aQ8CEI3 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC21.09■□□□□ 0.97
Ccdc28aQ8CEI3 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC21.09■□□□□ 0.97
Ccdc28aQ8CEI3 AC166356.1-201ENSMUST00000228236 1426 ntBASIC21.09■□□□□ 0.97
Ccdc28aQ8CEI3 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ccdc28aQ8CEI3 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ccdc28aQ8CEI3 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ccdc28aQ8CEI3 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Ccdc28aQ8CEI3 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Ccdc28aQ8CEI3 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Ccdc28aQ8CEI3 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Ccdc28aQ8CEI3 Gm10399-202ENSMUST00000202768 748 ntBASIC21.08■□□□□ 0.97
Ccdc28aQ8CEI3 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC21.08■□□□□ 0.97
Ccdc28aQ8CEI3 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Ccdc28aQ8CEI3 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC21.08■□□□□ 0.96
Ccdc28aQ8CEI3 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ccdc28aQ8CEI3 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ccdc28aQ8CEI3 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ccdc28aQ8CEI3 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ccdc28aQ8CEI3 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC21.07■□□□□ 0.96
Ccdc28aQ8CEI3 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Ccdc28aQ8CEI3 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ccdc28aQ8CEI3 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Ccdc28aQ8CEI3 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ccdc28aQ8CEI3 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ccdc28aQ8CEI3 Gm43909-201ENSMUST00000203443 1876 ntBASIC21.07■□□□□ 0.96
Ccdc28aQ8CEI3 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC21.06■□□□□ 0.96
Ccdc28aQ8CEI3 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ccdc28aQ8CEI3 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
Ccdc28aQ8CEI3 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ccdc28aQ8CEI3 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC21.06■□□□□ 0.96
Ccdc28aQ8CEI3 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ccdc28aQ8CEI3 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
Ccdc28aQ8CEI3 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Ccdc28aQ8CEI3 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ccdc28aQ8CEI3 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ccdc28aQ8CEI3 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
Ccdc28aQ8CEI3 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ccdc28aQ8CEI3 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Ccdc28aQ8CEI3 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC21.05■□□□□ 0.96
Ccdc28aQ8CEI3 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
Ccdc28aQ8CEI3 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
Ccdc28aQ8CEI3 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ccdc28aQ8CEI3 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
Ccdc28aQ8CEI3 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
Ccdc28aQ8CEI3 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ccdc28aQ8CEI3 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ccdc28aQ8CEI3 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ccdc28aQ8CEI3 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
Ccdc28aQ8CEI3 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Ccdc28aQ8CEI3 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC21.04■□□□□ 0.96
Ccdc28aQ8CEI3 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC21.04■□□□□ 0.96
Ccdc28aQ8CEI3 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Ccdc28aQ8CEI3 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ccdc28aQ8CEI3 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ccdc28aQ8CEI3 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ccdc28aQ8CEI3 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
Ccdc28aQ8CEI3 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Ccdc28aQ8CEI3 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Ccdc28aQ8CEI3 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ccdc28aQ8CEI3 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ccdc28aQ8CEI3 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Ccdc28aQ8CEI3 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Ccdc28aQ8CEI3 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Ccdc28aQ8CEI3 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
Ccdc28aQ8CEI3 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Ccdc28aQ8CEI3 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Ccdc28aQ8CEI3 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Ccdc28aQ8CEI3 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Ccdc28aQ8CEI3 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
Ccdc28aQ8CEI3 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.95
Ccdc28aQ8CEI3 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ccdc28aQ8CEI3 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ccdc28aQ8CEI3 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ccdc28aQ8CEI3 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ccdc28aQ8CEI3 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Ccdc28aQ8CEI3 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC21.01■□□□□ 0.95
Ccdc28aQ8CEI3 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ccdc28aQ8CEI3 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ccdc28aQ8CEI3 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ccdc28aQ8CEI3 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 17 ms