Protein–RNA interactions for Protein: Q8BJF9

Chmp2b, Charged multivesicular body protein 2b, mousemouse

Predictions only

Length 213 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp2bQ8BJF9 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Chmp2bQ8BJF9 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Chmp2bQ8BJF9 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Chmp2bQ8BJF9 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Chmp2bQ8BJF9 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Chmp2bQ8BJF9 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC20.45■□□□□ 0.86
Chmp2bQ8BJF9 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Chmp2bQ8BJF9 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Chmp2bQ8BJF9 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
Chmp2bQ8BJF9 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
Chmp2bQ8BJF9 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Chmp2bQ8BJF9 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Chmp2bQ8BJF9 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Chmp2bQ8BJF9 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Chmp2bQ8BJF9 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Chmp2bQ8BJF9 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Chmp2bQ8BJF9 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
Chmp2bQ8BJF9 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Chmp2bQ8BJF9 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Chmp2bQ8BJF9 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Chmp2bQ8BJF9 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Chmp2bQ8BJF9 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Chmp2bQ8BJF9 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Chmp2bQ8BJF9 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Chmp2bQ8BJF9 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
Chmp2bQ8BJF9 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Chmp2bQ8BJF9 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Chmp2bQ8BJF9 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Chmp2bQ8BJF9 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Chmp2bQ8BJF9 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
Chmp2bQ8BJF9 Gm10232-201ENSMUST00000089221 720 ntBASIC20.42■□□□□ 0.86
Chmp2bQ8BJF9 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
Chmp2bQ8BJF9 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC20.42■□□□□ 0.86
Chmp2bQ8BJF9 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Chmp2bQ8BJF9 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Chmp2bQ8BJF9 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Chmp2bQ8BJF9 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Chmp2bQ8BJF9 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC20.42■□□□□ 0.86
Chmp2bQ8BJF9 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Chmp2bQ8BJF9 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Chmp2bQ8BJF9 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC20.41■□□□□ 0.86
Chmp2bQ8BJF9 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC20.41■□□□□ 0.86
Chmp2bQ8BJF9 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Chmp2bQ8BJF9 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Chmp2bQ8BJF9 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Chmp2bQ8BJF9 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Chmp2bQ8BJF9 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Chmp2bQ8BJF9 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Chmp2bQ8BJF9 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Chmp2bQ8BJF9 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Chmp2bQ8BJF9 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Chmp2bQ8BJF9 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC20.4■□□□□ 0.86
Chmp2bQ8BJF9 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Chmp2bQ8BJF9 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Chmp2bQ8BJF9 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
Chmp2bQ8BJF9 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
Chmp2bQ8BJF9 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Chmp2bQ8BJF9 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Chmp2bQ8BJF9 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Chmp2bQ8BJF9 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Chmp2bQ8BJF9 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Chmp2bQ8BJF9 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Chmp2bQ8BJF9 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Chmp2bQ8BJF9 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Chmp2bQ8BJF9 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Chmp2bQ8BJF9 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
Chmp2bQ8BJF9 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC20.37■□□□□ 0.85
Chmp2bQ8BJF9 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Chmp2bQ8BJF9 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
Chmp2bQ8BJF9 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Chmp2bQ8BJF9 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Chmp2bQ8BJF9 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Chmp2bQ8BJF9 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Chmp2bQ8BJF9 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Chmp2bQ8BJF9 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Chmp2bQ8BJF9 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Chmp2bQ8BJF9 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Chmp2bQ8BJF9 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Chmp2bQ8BJF9 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
Chmp2bQ8BJF9 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Chmp2bQ8BJF9 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Chmp2bQ8BJF9 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
Chmp2bQ8BJF9 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC20.36■□□□□ 0.85
Chmp2bQ8BJF9 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Chmp2bQ8BJF9 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
Chmp2bQ8BJF9 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Chmp2bQ8BJF9 Gm43545-201ENSMUST00000196765 2779 ntBASIC20.35■□□□□ 0.85
Chmp2bQ8BJF9 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Chmp2bQ8BJF9 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Chmp2bQ8BJF9 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Chmp2bQ8BJF9 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Chmp2bQ8BJF9 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Chmp2bQ8BJF9 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Chmp2bQ8BJF9 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Chmp2bQ8BJF9 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC20.34■□□□□ 0.85
Chmp2bQ8BJF9 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Chmp2bQ8BJF9 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Chmp2bQ8BJF9 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC20.34■□□□□ 0.85
Chmp2bQ8BJF9 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Chmp2bQ8BJF9 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 32.6 ms