Protein–RNA interactions for Protein: Q8BHH8

Clrn3, Clarin-3, mousemouse

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn3Q8BHH8 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Clrn3Q8BHH8 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Clrn3Q8BHH8 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Clrn3Q8BHH8 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Clrn3Q8BHH8 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Clrn3Q8BHH8 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Clrn3Q8BHH8 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Clrn3Q8BHH8 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Clrn3Q8BHH8 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC18.69■□□□□ 0.58
Clrn3Q8BHH8 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Clrn3Q8BHH8 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Clrn3Q8BHH8 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Clrn3Q8BHH8 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
Clrn3Q8BHH8 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Clrn3Q8BHH8 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Clrn3Q8BHH8 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Clrn3Q8BHH8 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Clrn3Q8BHH8 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC18.69■□□□□ 0.58
Clrn3Q8BHH8 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC18.68■□□□□ 0.58
Clrn3Q8BHH8 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Clrn3Q8BHH8 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Clrn3Q8BHH8 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Clrn3Q8BHH8 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Clrn3Q8BHH8 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC18.68■□□□□ 0.58
Clrn3Q8BHH8 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Clrn3Q8BHH8 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Clrn3Q8BHH8 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Clrn3Q8BHH8 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Clrn3Q8BHH8 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Clrn3Q8BHH8 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Clrn3Q8BHH8 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Clrn3Q8BHH8 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Clrn3Q8BHH8 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Clrn3Q8BHH8 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC18.67■□□□□ 0.58
Clrn3Q8BHH8 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Clrn3Q8BHH8 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Clrn3Q8BHH8 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Clrn3Q8BHH8 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC18.67■□□□□ 0.58
Clrn3Q8BHH8 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Clrn3Q8BHH8 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Clrn3Q8BHH8 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Clrn3Q8BHH8 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Clrn3Q8BHH8 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Clrn3Q8BHH8 Gm10657-201ENSMUST00000193528 1031 ntBASIC18.66■□□□□ 0.58
Clrn3Q8BHH8 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
Clrn3Q8BHH8 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC18.66■□□□□ 0.58
Clrn3Q8BHH8 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC18.66■□□□□ 0.58
Clrn3Q8BHH8 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Clrn3Q8BHH8 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Clrn3Q8BHH8 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Clrn3Q8BHH8 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Clrn3Q8BHH8 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Clrn3Q8BHH8 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC18.65■□□□□ 0.58
Clrn3Q8BHH8 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Clrn3Q8BHH8 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Clrn3Q8BHH8 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Clrn3Q8BHH8 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC18.65■□□□□ 0.58
Clrn3Q8BHH8 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
Clrn3Q8BHH8 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Clrn3Q8BHH8 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Clrn3Q8BHH8 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Clrn3Q8BHH8 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Clrn3Q8BHH8 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Clrn3Q8BHH8 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Clrn3Q8BHH8 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Clrn3Q8BHH8 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Clrn3Q8BHH8 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Clrn3Q8BHH8 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Clrn3Q8BHH8 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC18.64■□□□□ 0.57
Clrn3Q8BHH8 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Clrn3Q8BHH8 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Clrn3Q8BHH8 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC18.63■□□□□ 0.57
Clrn3Q8BHH8 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
Clrn3Q8BHH8 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Clrn3Q8BHH8 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Clrn3Q8BHH8 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Clrn3Q8BHH8 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Clrn3Q8BHH8 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Clrn3Q8BHH8 Gm43530-201ENSMUST00000195920 274 ntBASIC18.63■□□□□ 0.57
Clrn3Q8BHH8 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Clrn3Q8BHH8 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Clrn3Q8BHH8 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Clrn3Q8BHH8 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Clrn3Q8BHH8 Gm12922-201ENSMUST00000120626 809 ntBASIC18.62■□□□□ 0.57
Clrn3Q8BHH8 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC18.62■□□□□ 0.57
Clrn3Q8BHH8 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC18.62■□□□□ 0.57
Clrn3Q8BHH8 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC18.62■□□□□ 0.57
Clrn3Q8BHH8 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Clrn3Q8BHH8 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Clrn3Q8BHH8 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC18.62■□□□□ 0.57
Clrn3Q8BHH8 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Clrn3Q8BHH8 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Clrn3Q8BHH8 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Clrn3Q8BHH8 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Clrn3Q8BHH8 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Clrn3Q8BHH8 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Clrn3Q8BHH8 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC18.61■□□□□ 0.57
Clrn3Q8BHH8 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Clrn3Q8BHH8 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Clrn3Q8BHH8 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 13 ms