Protein–RNA interactions for Protein: Q811S7

Ubp1, Upstream-binding protein 1, mousemouse

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubp1Q811S7 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Ubp1Q811S7 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Ubp1Q811S7 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ubp1Q811S7 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ubp1Q811S7 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ubp1Q811S7 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Ubp1Q811S7 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Ubp1Q811S7 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ubp1Q811S7 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ubp1Q811S7 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ubp1Q811S7 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Ubp1Q811S7 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ubp1Q811S7 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ubp1Q811S7 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ubp1Q811S7 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ubp1Q811S7 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Ubp1Q811S7 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ubp1Q811S7 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ubp1Q811S7 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ubp1Q811S7 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Ubp1Q811S7 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ubp1Q811S7 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC19.66■□□□□ 0.74
Ubp1Q811S7 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Ubp1Q811S7 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Ubp1Q811S7 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ubp1Q811S7 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC19.66■□□□□ 0.74
Ubp1Q811S7 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Ubp1Q811S7 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ubp1Q811S7 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Ubp1Q811S7 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ubp1Q811S7 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ubp1Q811S7 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ubp1Q811S7 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC19.66■□□□□ 0.74
Ubp1Q811S7 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ubp1Q811S7 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ubp1Q811S7 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ubp1Q811S7 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ubp1Q811S7 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ubp1Q811S7 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Ubp1Q811S7 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Ubp1Q811S7 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Ubp1Q811S7 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Ubp1Q811S7 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC19.64■□□□□ 0.74
Ubp1Q811S7 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Ubp1Q811S7 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ubp1Q811S7 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC19.64■□□□□ 0.73
Ubp1Q811S7 Gm43759-201ENSMUST00000196925 1261 ntBASIC19.64■□□□□ 0.73
Ubp1Q811S7 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ubp1Q811S7 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ubp1Q811S7 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ubp1Q811S7 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ubp1Q811S7 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC19.63■□□□□ 0.73
Ubp1Q811S7 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC19.63■□□□□ 0.73
Ubp1Q811S7 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ubp1Q811S7 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ubp1Q811S7 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ubp1Q811S7 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC19.63■□□□□ 0.73
Ubp1Q811S7 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ubp1Q811S7 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC19.63■□□□□ 0.73
Ubp1Q811S7 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ubp1Q811S7 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Ubp1Q811S7 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ubp1Q811S7 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Ubp1Q811S7 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ubp1Q811S7 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ubp1Q811S7 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
Ubp1Q811S7 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Ubp1Q811S7 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Ubp1Q811S7 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Ubp1Q811S7 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Ubp1Q811S7 Gm43006-201ENSMUST00000197702 1602 ntBASIC19.62■□□□□ 0.73
Ubp1Q811S7 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Ubp1Q811S7 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Ubp1Q811S7 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
Ubp1Q811S7 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Ubp1Q811S7 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ubp1Q811S7 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ubp1Q811S7 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Ubp1Q811S7 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ubp1Q811S7 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Ubp1Q811S7 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Ubp1Q811S7 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ubp1Q811S7 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ubp1Q811S7 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ubp1Q811S7 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Ubp1Q811S7 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
Ubp1Q811S7 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ubp1Q811S7 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ubp1Q811S7 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ubp1Q811S7 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Ubp1Q811S7 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC19.6■□□□□ 0.73
Ubp1Q811S7 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Ubp1Q811S7 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ubp1Q811S7 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ubp1Q811S7 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Ubp1Q811S7 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ubp1Q811S7 Gm37035-201ENSMUST00000194809 2148 ntBASIC19.6■□□□□ 0.73
Ubp1Q811S7 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC19.6■□□□□ 0.73
Ubp1Q811S7 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ubp1Q811S7 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 40.5 ms