Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trim40Q3UWA4 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Trim40Q3UWA4 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Trim40Q3UWA4 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trim40Q3UWA4 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Trim40Q3UWA4 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Trim40Q3UWA4 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Trim40Q3UWA4 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Trim40Q3UWA4 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trim40Q3UWA4 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trim40Q3UWA4 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
Trim40Q3UWA4 Gm43592-201ENSMUST00000196922 1165 ntBASIC18.7■□□□□ 0.58
Trim40Q3UWA4 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC18.69■□□□□ 0.58
Trim40Q3UWA4 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim40Q3UWA4 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Trim40Q3UWA4 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Trim40Q3UWA4 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC18.69■□□□□ 0.58
Trim40Q3UWA4 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim40Q3UWA4 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim40Q3UWA4 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim40Q3UWA4 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC18.69■□□□□ 0.58
Trim40Q3UWA4 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC18.69■□□□□ 0.58
Trim40Q3UWA4 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim40Q3UWA4 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC18.69■□□□□ 0.58
Trim40Q3UWA4 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC18.69■□□□□ 0.58
Trim40Q3UWA4 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim40Q3UWA4 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim40Q3UWA4 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim40Q3UWA4 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim40Q3UWA4 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC18.68■□□□□ 0.58
Trim40Q3UWA4 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Trim40Q3UWA4 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Trim40Q3UWA4 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim40Q3UWA4 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim40Q3UWA4 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
Trim40Q3UWA4 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Trim40Q3UWA4 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim40Q3UWA4 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim40Q3UWA4 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim40Q3UWA4 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Trim40Q3UWA4 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim40Q3UWA4 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim40Q3UWA4 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim40Q3UWA4 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Trim40Q3UWA4 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Trim40Q3UWA4 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Trim40Q3UWA4 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Trim40Q3UWA4 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC18.67■□□□□ 0.58
Trim40Q3UWA4 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim40Q3UWA4 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim40Q3UWA4 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim40Q3UWA4 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim40Q3UWA4 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim40Q3UWA4 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim40Q3UWA4 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
Trim40Q3UWA4 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim40Q3UWA4 Gm43909-201ENSMUST00000203443 1876 ntBASIC18.66■□□□□ 0.58
Trim40Q3UWA4 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Trim40Q3UWA4 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC18.66■□□□□ 0.58
Trim40Q3UWA4 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim40Q3UWA4 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim40Q3UWA4 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim40Q3UWA4 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim40Q3UWA4 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim40Q3UWA4 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim40Q3UWA4 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Trim40Q3UWA4 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC18.65■□□□□ 0.58
Trim40Q3UWA4 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Trim40Q3UWA4 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC18.64■□□□□ 0.57
Trim40Q3UWA4 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Trim40Q3UWA4 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Trim40Q3UWA4 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim40Q3UWA4 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC18.64■□□□□ 0.57
Trim40Q3UWA4 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC18.64■□□□□ 0.57
Trim40Q3UWA4 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim40Q3UWA4 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim40Q3UWA4 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim40Q3UWA4 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC18.64■□□□□ 0.57
Trim40Q3UWA4 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim40Q3UWA4 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim40Q3UWA4 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trim40Q3UWA4 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim40Q3UWA4 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim40Q3UWA4 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC18.63■□□□□ 0.57
Trim40Q3UWA4 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim40Q3UWA4 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trim40Q3UWA4 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim40Q3UWA4 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trim40Q3UWA4 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trim40Q3UWA4 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim40Q3UWA4 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim40Q3UWA4 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trim40Q3UWA4 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trim40Q3UWA4 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Trim40Q3UWA4 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC18.62■□□□□ 0.57
Trim40Q3UWA4 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim40Q3UWA4 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim40Q3UWA4 Golph3-205ENSMUST00000228671 2842 ntBASIC18.62■□□□□ 0.57
Trim40Q3UWA4 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim40Q3UWA4 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC18.62■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 40 ms