Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ptchd3Q0EEE2 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ptchd3Q0EEE2 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ptchd3Q0EEE2 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Ptchd3Q0EEE2 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ptchd3Q0EEE2 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ptchd3Q0EEE2 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ptchd3Q0EEE2 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Ptchd3Q0EEE2 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Ptchd3Q0EEE2 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ptchd3Q0EEE2 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Ptchd3Q0EEE2 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
Ptchd3Q0EEE2 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ptchd3Q0EEE2 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ptchd3Q0EEE2 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
Ptchd3Q0EEE2 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ptchd3Q0EEE2 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ptchd3Q0EEE2 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ptchd3Q0EEE2 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ptchd3Q0EEE2 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC19.25■□□□□ 0.67
Ptchd3Q0EEE2 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Ptchd3Q0EEE2 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ptchd3Q0EEE2 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ptchd3Q0EEE2 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC19.25■□□□□ 0.67
Ptchd3Q0EEE2 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ptchd3Q0EEE2 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ptchd3Q0EEE2 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ptchd3Q0EEE2 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ptchd3Q0EEE2 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ptchd3Q0EEE2 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
Ptchd3Q0EEE2 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Ptchd3Q0EEE2 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC19.24■□□□□ 0.67
Ptchd3Q0EEE2 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ptchd3Q0EEE2 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Ptchd3Q0EEE2 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ptchd3Q0EEE2 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ptchd3Q0EEE2 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ptchd3Q0EEE2 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC19.23■□□□□ 0.67
Ptchd3Q0EEE2 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ptchd3Q0EEE2 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ptchd3Q0EEE2 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC19.23■□□□□ 0.67
Ptchd3Q0EEE2 Gm16464-201ENSMUST00000117815 1095 ntBASIC19.23■□□□□ 0.67
Ptchd3Q0EEE2 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
Ptchd3Q0EEE2 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ptchd3Q0EEE2 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ptchd3Q0EEE2 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Ptchd3Q0EEE2 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ptchd3Q0EEE2 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ptchd3Q0EEE2 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ptchd3Q0EEE2 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC19.22■□□□□ 0.67
Ptchd3Q0EEE2 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Ptchd3Q0EEE2 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ptchd3Q0EEE2 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ptchd3Q0EEE2 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ptchd3Q0EEE2 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ptchd3Q0EEE2 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC19.22■□□□□ 0.67
Ptchd3Q0EEE2 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ptchd3Q0EEE2 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ptchd3Q0EEE2 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Ptchd3Q0EEE2 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC19.21■□□□□ 0.67
Ptchd3Q0EEE2 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ptchd3Q0EEE2 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC19.21■□□□□ 0.67
Ptchd3Q0EEE2 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
Ptchd3Q0EEE2 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ptchd3Q0EEE2 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Ptchd3Q0EEE2 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Ptchd3Q0EEE2 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ptchd3Q0EEE2 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ptchd3Q0EEE2 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Ptchd3Q0EEE2 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ptchd3Q0EEE2 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Ptchd3Q0EEE2 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Ptchd3Q0EEE2 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ptchd3Q0EEE2 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Ptchd3Q0EEE2 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC19.2■□□□□ 0.66
Ptchd3Q0EEE2 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Ptchd3Q0EEE2 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC19.2■□□□□ 0.66
Ptchd3Q0EEE2 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ptchd3Q0EEE2 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ptchd3Q0EEE2 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Ptchd3Q0EEE2 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC19.19■□□□□ 0.66
Ptchd3Q0EEE2 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC19.19■□□□□ 0.66
Ptchd3Q0EEE2 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ptchd3Q0EEE2 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ptchd3Q0EEE2 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
Ptchd3Q0EEE2 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ptchd3Q0EEE2 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Ptchd3Q0EEE2 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Ptchd3Q0EEE2 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ptchd3Q0EEE2 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ptchd3Q0EEE2 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ptchd3Q0EEE2 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Ptchd3Q0EEE2 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ptchd3Q0EEE2 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ptchd3Q0EEE2 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ptchd3Q0EEE2 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Ptchd3Q0EEE2 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC19.18■□□□□ 0.66
Ptchd3Q0EEE2 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Ptchd3Q0EEE2 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ptchd3Q0EEE2 Gm5112-201ENSMUST00000204407 2368 ntBASIC19.18■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 20.5 ms