Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdh11P55288 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC18.15■□□□□ 0.5
Cdh11P55288 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cdh11P55288 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC18.15■□□□□ 0.5
Cdh11P55288 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Cdh11P55288 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cdh11P55288 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC18.15■□□□□ 0.5
Cdh11P55288 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cdh11P55288 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cdh11P55288 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Cdh11P55288 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC18.14■□□□□ 0.49
Cdh11P55288 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Cdh11P55288 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cdh11P55288 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cdh11P55288 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Cdh11P55288 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC18.14■□□□□ 0.49
Cdh11P55288 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC18.14■□□□□ 0.49
Cdh11P55288 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cdh11P55288 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cdh11P55288 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cdh11P55288 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cdh11P55288 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cdh11P55288 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cdh11P55288 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC18.14■□□□□ 0.49
Cdh11P55288 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cdh11P55288 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Cdh11P55288 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cdh11P55288 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cdh11P55288 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC18.13■□□□□ 0.49
Cdh11P55288 AC116713.1-201ENSMUST00000215074 430 ntBASIC18.13■□□□□ 0.49
Cdh11P55288 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cdh11P55288 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Cdh11P55288 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cdh11P55288 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cdh11P55288 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Cdh11P55288 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cdh11P55288 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Cdh11P55288 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Cdh11P55288 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cdh11P55288 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cdh11P55288 AC122428.2-201ENSMUST00000216321 1832 ntBASIC18.12■□□□□ 0.49
Cdh11P55288 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cdh11P55288 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cdh11P55288 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Cdh11P55288 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Cdh11P55288 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cdh11P55288 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cdh11P55288 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cdh11P55288 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cdh11P55288 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cdh11P55288 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Cdh11P55288 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cdh11P55288 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cdh11P55288 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Cdh11P55288 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
Cdh11P55288 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cdh11P55288 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Cdh11P55288 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Cdh11P55288 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cdh11P55288 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cdh11P55288 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cdh11P55288 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cdh11P55288 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cdh11P55288 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
Cdh11P55288 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cdh11P55288 Gm22238-201ENSMUST00000175222 88 ntBASIC18.1■□□□□ 0.49
Cdh11P55288 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cdh11P55288 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC18.1■□□□□ 0.49
Cdh11P55288 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cdh11P55288 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cdh11P55288 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cdh11P55288 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cdh11P55288 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Cdh11P55288 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
Cdh11P55288 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Cdh11P55288 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Cdh11P55288 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC18.09■□□□□ 0.49
Cdh11P55288 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Cdh11P55288 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Cdh11P55288 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Cdh11P55288 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Cdh11P55288 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Cdh11P55288 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Cdh11P55288 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Cdh11P55288 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC18.08■□□□□ 0.49
Cdh11P55288 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Cdh11P55288 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Cdh11P55288 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Cdh11P55288 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC18.08■□□□□ 0.48
Cdh11P55288 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Cdh11P55288 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Cdh11P55288 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Cdh11P55288 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC18.08■□□□□ 0.48
Cdh11P55288 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
Cdh11P55288 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
Cdh11P55288 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Cdh11P55288 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Cdh11P55288 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Cdh11P55288 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
Cdh11P55288 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 13.6 ms