Protein–RNA interactions for Protein: P40224

Cxcl12, Stromal cell-derived factor 1, mousemouse

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cxcl12P40224 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cxcl12P40224 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cxcl12P40224 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Cxcl12P40224 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cxcl12P40224 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Cxcl12P40224 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Cxcl12P40224 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Cxcl12P40224 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Cxcl12P40224 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Cxcl12P40224 Gm12527-201ENSMUST00000117967 564 ntBASIC20.87■□□□□ 0.93
Cxcl12P40224 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Cxcl12P40224 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Cxcl12P40224 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Cxcl12P40224 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
Cxcl12P40224 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Cxcl12P40224 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC20.86■□□□□ 0.93
Cxcl12P40224 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Cxcl12P40224 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC20.86■□□□□ 0.93
Cxcl12P40224 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Cxcl12P40224 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
Cxcl12P40224 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
Cxcl12P40224 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Cxcl12P40224 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Cxcl12P40224 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Cxcl12P40224 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cxcl12P40224 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Cxcl12P40224 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Cxcl12P40224 Mir6236-201ENSMUST00000184437 123 ntBASIC20.84■□□□□ 0.93
Cxcl12P40224 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cxcl12P40224 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cxcl12P40224 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Cxcl12P40224 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cxcl12P40224 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Cxcl12P40224 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Cxcl12P40224 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Cxcl12P40224 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC20.83■□□□□ 0.93
Cxcl12P40224 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC20.83■□□□□ 0.93
Cxcl12P40224 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Cxcl12P40224 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Cxcl12P40224 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Cxcl12P40224 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cxcl12P40224 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Cxcl12P40224 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC20.82■□□□□ 0.92
Cxcl12P40224 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
Cxcl12P40224 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cxcl12P40224 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC20.81■□□□□ 0.92
Cxcl12P40224 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cxcl12P40224 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cxcl12P40224 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cxcl12P40224 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Cxcl12P40224 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Cxcl12P40224 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Cxcl12P40224 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Cxcl12P40224 Gm13168-201ENSMUST00000121771 632 ntBASIC20.8■□□□□ 0.92
Cxcl12P40224 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
Cxcl12P40224 Gm5408-201ENSMUST00000197998 747 ntBASIC20.8■□□□□ 0.92
Cxcl12P40224 Gm42418-201ENSMUST00000182010 1831 ntBASIC20.8■□□□□ 0.92
Cxcl12P40224 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
Cxcl12P40224 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Cxcl12P40224 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cxcl12P40224 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cxcl12P40224 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC20.79■□□□□ 0.92
Cxcl12P40224 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cxcl12P40224 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC20.79■□□□□ 0.92
Cxcl12P40224 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cxcl12P40224 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cxcl12P40224 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Cxcl12P40224 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC20.79■□□□□ 0.92
Cxcl12P40224 Gm10571-201ENSMUST00000097869 1638 ntBASIC20.78■□□□□ 0.92
Cxcl12P40224 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Cxcl12P40224 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cxcl12P40224 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC20.78■□□□□ 0.92
Cxcl12P40224 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cxcl12P40224 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cxcl12P40224 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cxcl12P40224 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cxcl12P40224 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cxcl12P40224 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cxcl12P40224 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC20.77■□□□□ 0.92
Cxcl12P40224 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC20.77■□□□□ 0.92
Cxcl12P40224 AC158538.1-201ENSMUST00000225870 294 ntBASIC20.77■□□□□ 0.92
Cxcl12P40224 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Cxcl12P40224 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC20.77■□□□□ 0.92
Cxcl12P40224 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
Cxcl12P40224 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
Cxcl12P40224 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cxcl12P40224 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Cxcl12P40224 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
Cxcl12P40224 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Cxcl12P40224 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cxcl12P40224 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cxcl12P40224 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cxcl12P40224 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Cxcl12P40224 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cxcl12P40224 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Cxcl12P40224 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cxcl12P40224 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cxcl12P40224 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cxcl12P40224 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cxcl12P40224 Gm7290-201ENSMUST00000104990 617 ntBASIC20.75■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 18.7 ms