Protein–RNA interactions for Protein: P20040

H-2 class II histocompatibility antigen, E-Q beta chain, mousemouse

Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
P20040 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
P20040 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
P20040 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC17.67■□□□□ 0.42
P20040 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
P20040 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
P20040 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
P20040 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
P20040 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
P20040 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
P20040 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC17.67■□□□□ 0.42
P20040 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
P20040 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
P20040 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
P20040 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
P20040 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
P20040 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
P20040 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC17.67■□□□□ 0.42
P20040 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
P20040 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
P20040 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
P20040 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
P20040 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
P20040 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
P20040 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
P20040 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
P20040 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC17.66■□□□□ 0.42
P20040 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
P20040 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
P20040 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
P20040 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
P20040 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC17.66■□□□□ 0.42
P20040 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
P20040 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
P20040 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
P20040 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
P20040 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
P20040 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
P20040 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
P20040 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
P20040 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
P20040 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
P20040 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
P20040 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
P20040 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
P20040 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
P20040 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
P20040 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC17.65■□□□□ 0.42
P20040 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC17.65■□□□□ 0.42
P20040 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
P20040 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
P20040 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
P20040 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
P20040 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
P20040 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
P20040 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
P20040 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
P20040 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
P20040 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC17.64■□□□□ 0.41
P20040 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
P20040 Gm22238-201ENSMUST00000175222 88 ntBASIC17.64■□□□□ 0.41
P20040 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
P20040 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
P20040 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
P20040 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
P20040 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
P20040 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
P20040 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC17.63■□□□□ 0.41
P20040 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
P20040 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
P20040 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
P20040 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
P20040 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
P20040 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
P20040 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC17.63■□□□□ 0.41
P20040 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
P20040 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
P20040 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
P20040 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
P20040 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
P20040 Gm43545-201ENSMUST00000196765 2779 ntBASIC17.62■□□□□ 0.41
P20040 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC17.62■□□□□ 0.41
P20040 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
P20040 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
P20040 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC17.62■□□□□ 0.41
P20040 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
P20040 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
P20040 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
P20040 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
P20040 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC17.62■□□□□ 0.41
P20040 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
P20040 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
P20040 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC17.61■□□□□ 0.41
P20040 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
P20040 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
P20040 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
P20040 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC17.61■□□□□ 0.41
P20040 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
P20040 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
P20040 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC17.61■□□□□ 0.41
P20040 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 15.6 ms