Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Col5a1O88207 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col5a1O88207 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col5a1O88207 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col5a1O88207 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Col5a1O88207 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
Col5a1O88207 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col5a1O88207 Gm44949-201ENSMUST00000206423 1450 ntBASIC18.39■□□□□ 0.53
Col5a1O88207 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col5a1O88207 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC18.39■□□□□ 0.53
Col5a1O88207 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col5a1O88207 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col5a1O88207 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col5a1O88207 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col5a1O88207 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col5a1O88207 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col5a1O88207 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col5a1O88207 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Col5a1O88207 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC18.38■□□□□ 0.53
Col5a1O88207 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col5a1O88207 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Col5a1O88207 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col5a1O88207 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Col5a1O88207 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Col5a1O88207 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col5a1O88207 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Col5a1O88207 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC18.36■□□□□ 0.53
Col5a1O88207 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col5a1O88207 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col5a1O88207 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col5a1O88207 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col5a1O88207 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC18.36■□□□□ 0.53
Col5a1O88207 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col5a1O88207 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC18.36■□□□□ 0.53
Col5a1O88207 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC18.36■□□□□ 0.53
Col5a1O88207 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Col5a1O88207 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Col5a1O88207 Gm13042-201ENSMUST00000119244 1955 ntBASIC18.36■□□□□ 0.53
Col5a1O88207 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col5a1O88207 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col5a1O88207 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col5a1O88207 Gm12441-201ENSMUST00000121806 588 ntBASIC18.35■□□□□ 0.53
Col5a1O88207 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Col5a1O88207 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col5a1O88207 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Col5a1O88207 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col5a1O88207 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col5a1O88207 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Col5a1O88207 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Col5a1O88207 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Col5a1O88207 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col5a1O88207 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col5a1O88207 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col5a1O88207 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC18.34■□□□□ 0.53
Col5a1O88207 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col5a1O88207 Gm11421-201ENSMUST00000122124 294 ntBASIC18.34■□□□□ 0.53
Col5a1O88207 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Col5a1O88207 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC18.34■□□□□ 0.53
Col5a1O88207 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col5a1O88207 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col5a1O88207 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col5a1O88207 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col5a1O88207 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Col5a1O88207 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Col5a1O88207 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Col5a1O88207 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC18.33■□□□□ 0.53
Col5a1O88207 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC18.33■□□□□ 0.53
Col5a1O88207 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Col5a1O88207 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
Col5a1O88207 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC18.33■□□□□ 0.52
Col5a1O88207 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC18.33■□□□□ 0.52
Col5a1O88207 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
Col5a1O88207 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC18.33■□□□□ 0.52
Col5a1O88207 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
Col5a1O88207 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col5a1O88207 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col5a1O88207 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col5a1O88207 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC18.32■□□□□ 0.52
Col5a1O88207 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col5a1O88207 Gm42778-201ENSMUST00000199644 553 ntBASIC18.32■□□□□ 0.52
Col5a1O88207 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Col5a1O88207 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col5a1O88207 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
Col5a1O88207 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col5a1O88207 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col5a1O88207 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Col5a1O88207 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Col5a1O88207 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC18.3■□□□□ 0.52
Col5a1O88207 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col5a1O88207 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC18.3■□□□□ 0.52
Col5a1O88207 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col5a1O88207 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col5a1O88207 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col5a1O88207 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC18.3■□□□□ 0.52
Col5a1O88207 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Col5a1O88207 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC18.3■□□□□ 0.52
Col5a1O88207 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
Col5a1O88207 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Col5a1O88207 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Col5a1O88207 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 17.5 ms