Protein–RNA interactions for Protein: O35188

Cx3cl1, Fractalkine, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cx3cl1O35188 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cx3cl1O35188 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cx3cl1O35188 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cx3cl1O35188 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cx3cl1O35188 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Cx3cl1O35188 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cx3cl1O35188 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC18.74■□□□□ 0.59
Cx3cl1O35188 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cx3cl1O35188 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cx3cl1O35188 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
Cx3cl1O35188 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cx3cl1O35188 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cx3cl1O35188 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
Cx3cl1O35188 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cx3cl1O35188 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cx3cl1O35188 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cx3cl1O35188 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cx3cl1O35188 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cx3cl1O35188 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC18.72■□□□□ 0.59
Cx3cl1O35188 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Cx3cl1O35188 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC18.72■□□□□ 0.59
Cx3cl1O35188 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Cx3cl1O35188 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Cx3cl1O35188 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC18.72■□□□□ 0.59
Cx3cl1O35188 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC18.72■□□□□ 0.59
Cx3cl1O35188 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Cx3cl1O35188 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Cx3cl1O35188 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Cx3cl1O35188 Gm12821-201ENSMUST00000120022 600 ntBASIC18.71■□□□□ 0.59
Cx3cl1O35188 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Cx3cl1O35188 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC18.71■□□□□ 0.59
Cx3cl1O35188 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
Cx3cl1O35188 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Cx3cl1O35188 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Cx3cl1O35188 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cx3cl1O35188 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC18.7■□□□□ 0.58
Cx3cl1O35188 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC18.7■□□□□ 0.58
Cx3cl1O35188 Appbp2os-202ENSMUST00000206972 447 ntBASIC18.7■□□□□ 0.58
Cx3cl1O35188 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cx3cl1O35188 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Cx3cl1O35188 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cx3cl1O35188 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cx3cl1O35188 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cx3cl1O35188 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC18.7■□□□□ 0.58
Cx3cl1O35188 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cx3cl1O35188 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
Cx3cl1O35188 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cx3cl1O35188 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Cx3cl1O35188 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cx3cl1O35188 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cx3cl1O35188 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Cx3cl1O35188 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC18.69■□□□□ 0.58
Cx3cl1O35188 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Cx3cl1O35188 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cx3cl1O35188 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cx3cl1O35188 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Cx3cl1O35188 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cx3cl1O35188 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Cx3cl1O35188 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC18.69■□□□□ 0.58
Cx3cl1O35188 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cx3cl1O35188 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC18.68■□□□□ 0.58
Cx3cl1O35188 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Cx3cl1O35188 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
Cx3cl1O35188 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC18.68■□□□□ 0.58
Cx3cl1O35188 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cx3cl1O35188 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cx3cl1O35188 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cx3cl1O35188 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cx3cl1O35188 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cx3cl1O35188 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cx3cl1O35188 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cx3cl1O35188 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Cx3cl1O35188 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Cx3cl1O35188 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Cx3cl1O35188 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Cx3cl1O35188 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cx3cl1O35188 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cx3cl1O35188 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cx3cl1O35188 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Cx3cl1O35188 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cx3cl1O35188 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cx3cl1O35188 Gm27454-201ENSMUST00000185090 204 ntBASIC18.66■□□□□ 0.58
Cx3cl1O35188 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Cx3cl1O35188 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cx3cl1O35188 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cx3cl1O35188 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cx3cl1O35188 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cx3cl1O35188 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC18.65■□□□□ 0.58
Cx3cl1O35188 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC18.65■□□□□ 0.58
Cx3cl1O35188 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cx3cl1O35188 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cx3cl1O35188 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Cx3cl1O35188 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cx3cl1O35188 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cx3cl1O35188 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cx3cl1O35188 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cx3cl1O35188 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
Cx3cl1O35188 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
Cx3cl1O35188 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Cx3cl1O35188 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 19.4 ms