Protein–RNA interactions for Protein: E9PWQ3

Col6a3, Collagen, type VI, alpha 3, mousemouse

Predictions only

Length 3,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a3E9PWQ3 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
Col6a3E9PWQ3 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col6a3E9PWQ3 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col6a3E9PWQ3 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col6a3E9PWQ3 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC20.58■□□□□ 0.89
Col6a3E9PWQ3 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC20.58■□□□□ 0.88
Col6a3E9PWQ3 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.88
Col6a3E9PWQ3 Gm10231-201ENSMUST00000181584 441 ntBASIC20.58■□□□□ 0.88
Col6a3E9PWQ3 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC20.58■□□□□ 0.88
Col6a3E9PWQ3 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Col6a3E9PWQ3 Gm10175-202ENSMUST00000208752 441 ntBASIC20.58■□□□□ 0.88
Col6a3E9PWQ3 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Col6a3E9PWQ3 Gm9987-201ENSMUST00000069768 567 ntBASIC20.58■□□□□ 0.88
Col6a3E9PWQ3 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Col6a3E9PWQ3 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Col6a3E9PWQ3 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.88
Col6a3E9PWQ3 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Col6a3E9PWQ3 Gm7367-201ENSMUST00000057611 492 ntBASIC20.58■□□□□ 0.88
Col6a3E9PWQ3 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col6a3E9PWQ3 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col6a3E9PWQ3 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC20.57■□□□□ 0.88
Col6a3E9PWQ3 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col6a3E9PWQ3 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC20.57■□□□□ 0.88
Col6a3E9PWQ3 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC20.57■□□□□ 0.88
Col6a3E9PWQ3 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col6a3E9PWQ3 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col6a3E9PWQ3 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC20.56■□□□□ 0.88
Col6a3E9PWQ3 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col6a3E9PWQ3 Gm6420-201ENSMUST00000193885 723 ntBASIC20.56■□□□□ 0.88
Col6a3E9PWQ3 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC20.56■□□□□ 0.88
Col6a3E9PWQ3 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col6a3E9PWQ3 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC20.56■□□□□ 0.88
Col6a3E9PWQ3 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Col6a3E9PWQ3 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Col6a3E9PWQ3 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col6a3E9PWQ3 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col6a3E9PWQ3 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Col6a3E9PWQ3 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Col6a3E9PWQ3 Gm6365-201ENSMUST00000054711 744 ntBASIC20.54■□□□□ 0.88
Col6a3E9PWQ3 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col6a3E9PWQ3 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Col6a3E9PWQ3 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col6a3E9PWQ3 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col6a3E9PWQ3 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Col6a3E9PWQ3 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col6a3E9PWQ3 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC20.53■□□□□ 0.88
Col6a3E9PWQ3 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Col6a3E9PWQ3 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
Col6a3E9PWQ3 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col6a3E9PWQ3 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col6a3E9PWQ3 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Col6a3E9PWQ3 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
Col6a3E9PWQ3 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC20.52■□□□□ 0.88
Col6a3E9PWQ3 Gm5643-201ENSMUST00000117081 966 ntBASIC20.52■□□□□ 0.87
Col6a3E9PWQ3 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Col6a3E9PWQ3 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Col6a3E9PWQ3 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Col6a3E9PWQ3 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
Col6a3E9PWQ3 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col6a3E9PWQ3 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col6a3E9PWQ3 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col6a3E9PWQ3 Gm37055-201ENSMUST00000191866 133 ntBASIC20.51■□□□□ 0.87
Col6a3E9PWQ3 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC20.51■□□□□ 0.87
Col6a3E9PWQ3 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col6a3E9PWQ3 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col6a3E9PWQ3 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col6a3E9PWQ3 H3f3aos-201ENSMUST00000097448 2905 ntBASIC20.51■□□□□ 0.87
Col6a3E9PWQ3 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
Col6a3E9PWQ3 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col6a3E9PWQ3 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC20.5■□□□□ 0.87
Col6a3E9PWQ3 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Col6a3E9PWQ3 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
Col6a3E9PWQ3 Gm27045-201ENSMUST00000182145 1402 ntBASIC20.5■□□□□ 0.87
Col6a3E9PWQ3 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col6a3E9PWQ3 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC20.5■□□□□ 0.87
Col6a3E9PWQ3 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col6a3E9PWQ3 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Col6a3E9PWQ3 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col6a3E9PWQ3 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC20.49■□□□□ 0.87
Col6a3E9PWQ3 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Col6a3E9PWQ3 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col6a3E9PWQ3 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Col6a3E9PWQ3 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC20.49■□□□□ 0.87
Col6a3E9PWQ3 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Col6a3E9PWQ3 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
Col6a3E9PWQ3 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Col6a3E9PWQ3 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC20.48■□□□□ 0.87
Col6a3E9PWQ3 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Col6a3E9PWQ3 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC20.48■□□□□ 0.87
Col6a3E9PWQ3 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
Col6a3E9PWQ3 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col6a3E9PWQ3 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
Col6a3E9PWQ3 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col6a3E9PWQ3 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col6a3E9PWQ3 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col6a3E9PWQ3 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col6a3E9PWQ3 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col6a3E9PWQ3 Gm6934-201ENSMUST00000194780 1905 ntBASIC20.47■□□□□ 0.87
Col6a3E9PWQ3 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col6a3E9PWQ3 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC20.47■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 20.9 ms