Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Chd3B1AR17 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Chd3B1AR17 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
Chd3B1AR17 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Chd3B1AR17 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Chd3B1AR17 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Chd3B1AR17 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Chd3B1AR17 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC19.72■□□□□ 0.75
Chd3B1AR17 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
Chd3B1AR17 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Chd3B1AR17 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Chd3B1AR17 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Chd3B1AR17 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Chd3B1AR17 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Chd3B1AR17 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Chd3B1AR17 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Chd3B1AR17 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Chd3B1AR17 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Chd3B1AR17 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Chd3B1AR17 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Chd3B1AR17 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Chd3B1AR17 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Chd3B1AR17 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
Chd3B1AR17 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC19.7■□□□□ 0.74
Chd3B1AR17 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Chd3B1AR17 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Chd3B1AR17 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Chd3B1AR17 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC19.7■□□□□ 0.74
Chd3B1AR17 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Chd3B1AR17 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC19.7■□□□□ 0.74
Chd3B1AR17 Gm13042-201ENSMUST00000119244 1955 ntBASIC19.69■□□□□ 0.74
Chd3B1AR17 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC19.69■□□□□ 0.74
Chd3B1AR17 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Chd3B1AR17 Cdc34b-202ENSMUST00000188741 1252 ntBASIC19.69■□□□□ 0.74
Chd3B1AR17 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Chd3B1AR17 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Chd3B1AR17 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC19.69■□□□□ 0.74
Chd3B1AR17 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Chd3B1AR17 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Chd3B1AR17 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC19.69■□□□□ 0.74
Chd3B1AR17 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Chd3B1AR17 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Chd3B1AR17 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Chd3B1AR17 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Chd3B1AR17 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Chd3B1AR17 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Chd3B1AR17 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Chd3B1AR17 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Chd3B1AR17 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Chd3B1AR17 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Chd3B1AR17 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Chd3B1AR17 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Chd3B1AR17 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC19.67■□□□□ 0.74
Chd3B1AR17 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Chd3B1AR17 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Chd3B1AR17 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Chd3B1AR17 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Chd3B1AR17 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC19.67■□□□□ 0.74
Chd3B1AR17 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Chd3B1AR17 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Chd3B1AR17 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Chd3B1AR17 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Chd3B1AR17 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Chd3B1AR17 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Chd3B1AR17 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Chd3B1AR17 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Chd3B1AR17 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
Chd3B1AR17 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Chd3B1AR17 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Chd3B1AR17 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Chd3B1AR17 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC19.65■□□□□ 0.74
Chd3B1AR17 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
Chd3B1AR17 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Chd3B1AR17 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC19.65■□□□□ 0.74
Chd3B1AR17 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Chd3B1AR17 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Chd3B1AR17 Gm10129-202ENSMUST00000193100 1316 ntBASIC19.65■□□□□ 0.74
Chd3B1AR17 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Chd3B1AR17 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Chd3B1AR17 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC19.64■□□□□ 0.74
Chd3B1AR17 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Chd3B1AR17 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
Chd3B1AR17 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Chd3B1AR17 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Chd3B1AR17 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Chd3B1AR17 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Chd3B1AR17 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Chd3B1AR17 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Chd3B1AR17 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Chd3B1AR17 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Chd3B1AR17 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Chd3B1AR17 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Chd3B1AR17 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Chd3B1AR17 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Chd3B1AR17 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Chd3B1AR17 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
Chd3B1AR17 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Chd3B1AR17 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Chd3B1AR17 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Chd3B1AR17 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 21.8 ms