Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Add1-202ENSMUST00000052836 2337 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Cux1P53564 Apc2-202ENSMUST00000105359 9173 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Cux1P53564 Gm45895-201ENSMUST00000212248 1697 ntTSL 5 BASIC16.33■□□□□ 0.2
Cux1P53564 Sp6-201ENSMUST00000047997 3546 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Cux1P53564 Dysf-201ENSMUST00000081904 6660 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
Cux1P53564 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Cux1P53564 Gm15587-201ENSMUST00000146326 3493 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Cux1P53564 Plch2-206ENSMUST00000135665 4349 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Cux1P53564 Tomm5-203ENSMUST00000107809 738 ntTSL 3 BASIC16.33■□□□□ 0.2
Cux1P53564 Pvalb-202ENSMUST00000120592 953 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Cux1P53564 AA623943-201ENSMUST00000121794 354 ntBASIC16.33■□□□□ 0.2
Cux1P53564 Gm26021-201ENSMUST00000158664 131 ntBASIC16.33■□□□□ 0.2
Cux1P53564 Gm17147-201ENSMUST00000164176 432 ntBASIC16.33■□□□□ 0.2
Cux1P53564 Gm18552-201ENSMUST00000187425 538 ntBASIC16.33■□□□□ 0.2
Cux1P53564 Gm29135-201ENSMUST00000188411 612 ntTSL 5 BASIC16.33■□□□□ 0.2
Cux1P53564 Gm43777-201ENSMUST00000197269 376 ntTSL 3 BASIC16.33■□□□□ 0.2
Cux1P53564 Ift22-204ENSMUST00000200153 670 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Cux1P53564 Zfp787-203ENSMUST00000207331 376 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Cux1P53564 AC151971.6-201ENSMUST00000216193 866 ntBASIC16.33■□□□□ 0.2
Cux1P53564 Gm38271-201ENSMUST00000192296 1603 ntBASIC16.33■□□□□ 0.2
Cux1P53564 Tmprss11c-201ENSMUST00000059424 1615 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Cux1P53564 Clpb-201ENSMUST00000001884 4627 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Cux1P53564 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Cux1P53564 Pcdhga9-201ENSMUST00000091935 4724 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Cux1P53564 Spata33-208ENSMUST00000212892 2940 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Cux1P53564 Ppp2r1b-201ENSMUST00000034560 3647 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Cux1P53564 Fastkd5-201ENSMUST00000110262 3015 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
Cux1P53564 Cbx7-201ENSMUST00000089293 3388 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Cux1P53564 Sept11-201ENSMUST00000074733 5028 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Cux1P53564 Epb41-208ENSMUST00000105981 5303 ntAPPRIS P3 TSL 5 BASIC16.33■□□□□ 0.2
Cux1P53564 AC154186.1-201ENSMUST00000227711 1597 ntBASIC16.32■□□□□ 0.2
Cux1P53564 Rapgef3-204ENSMUST00000128775 3586 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Cux1P53564 Gm15082-201ENSMUST00000147045 1960 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Cux1P53564 Ephx3-201ENSMUST00000087721 2416 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cux1P53564 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cux1P53564 Gm45397-201ENSMUST00000209816 1600 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Cux1P53564 Aldh3a2-202ENSMUST00000074127 3091 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cux1P53564 Ly6e-202ENSMUST00000169343 2154 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Cux1P53564 Nol3-201ENSMUST00000014920 3176 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cux1P53564 Bex3-203ENSMUST00000113113 766 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cux1P53564 4930589P08Rik-201ENSMUST00000129097 1084 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Cux1P53564 1700017J07Rik-201ENSMUST00000140241 473 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Cux1P53564 Gm9513-201ENSMUST00000165591 306 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cux1P53564 Gm24180-201ENSMUST00000179961 110 ntBASIC16.32■□□□□ 0.2
Cux1P53564 Gm6967-201ENSMUST00000182599 1007 ntBASIC16.32■□□□□ 0.2
Cux1P53564 Gm28806-201ENSMUST00000191134 528 ntTSL 5 BASIC16.32■□□□□ 0.2
Cux1P53564 1700030N03Rik-206ENSMUST00000191405 651 ntTSL 3 BASIC16.32■□□□□ 0.2
Cux1P53564 Gm18646-201ENSMUST00000212240 1063 ntBASIC16.32■□□□□ 0.2
Cux1P53564 Hspb11-201ENSMUST00000046558 608 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cux1P53564 Gm6304-201ENSMUST00000096579 447 ntBASIC16.32■□□□□ 0.2
Cux1P53564 Fcrla-203ENSMUST00000159171 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cux1P53564 Dtl-201ENSMUST00000027933 4212 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cux1P53564 Pfkfb3-215ENSMUST00000183869 1478 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Cux1P53564 Nbeal2-206ENSMUST00000133191 8782 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Cux1P53564 Srebf1-201ENSMUST00000020846 4299 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cux1P53564 Fam210b-201ENSMUST00000028995 3617 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cux1P53564 Tex9-214ENSMUST00000184831 1652 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Cux1P53564 Gm5532-201ENSMUST00000097531 1751 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Cux1P53564 Zfp386-201ENSMUST00000073551 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cux1P53564 Rint1-203ENSMUST00000115113 3048 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cux1P53564 Tfap2b-204ENSMUST00000187754 3023 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Cux1P53564 Lcorl-205ENSMUST00000121573 2378 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Cux1P53564 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cux1P53564 Magi1-201ENSMUST00000055224 7007 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Cux1P53564 Tmed8-201ENSMUST00000037418 7409 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cux1P53564 Smndc1-201ENSMUST00000025997 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cux1P53564 Cdc42-202ENSMUST00000051477 2108 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cux1P53564 Gm13758-201ENSMUST00000118699 743 ntBASIC16.31■□□□□ 0.2
Cux1P53564 Nsa2-ps2-201ENSMUST00000120785 773 ntBASIC16.31■□□□□ 0.2
Cux1P53564 Apela-201ENSMUST00000124790 945 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
Cux1P53564 Gm13580-201ENSMUST00000131457 566 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Cux1P53564 A630023P12Rik-203ENSMUST00000141532 638 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Cux1P53564 Gm16252-201ENSMUST00000144420 857 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Cux1P53564 Rrm2b-207ENSMUST00000146821 420 ntTSL 5 BASIC16.31■□□□□ 0.2
Cux1P53564 Rsl24d1-203ENSMUST00000165177 597 ntTSL 3 BASIC16.31■□□□□ 0.2
Cux1P53564 Gm3898-201ENSMUST00000180221 613 ntTSL 5 BASIC16.31■□□□□ 0.2
Cux1P53564 Gm26610-201ENSMUST00000181529 1024 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Cux1P53564 Gm6773-201ENSMUST00000182377 878 ntBASIC16.31■□□□□ 0.2
Cux1P53564 1700065O20Rik-201ENSMUST00000186872 710 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Cux1P53564 Spin3-ps-201ENSMUST00000192825 770 ntBASIC16.31■□□□□ 0.2
Cux1P53564 Gm33969-201ENSMUST00000197615 388 ntTSL 3 BASIC16.31■□□□□ 0.2
Cux1P53564 Nudc-ps1-201ENSMUST00000209275 551 ntBASIC16.31■□□□□ 0.2
Cux1P53564 Rpl21-ps2-201ENSMUST00000222933 481 ntBASIC16.31■□□□□ 0.2
Cux1P53564 Sgca-201ENSMUST00000100551 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cux1P53564 Vps4b-202ENSMUST00000112736 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cux1P53564 Tulp2-203ENSMUST00000107758 1597 ntTSL 5 BASIC16.31■□□□□ 0.2
Cux1P53564 Tmem266-202ENSMUST00000085754 4417 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cux1P53564 Sppl2b-211ENSMUST00000220091 3629 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Cux1P53564 Pars2-202ENSMUST00000106781 3046 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cux1P53564 Gm28042-203ENSMUST00000156805 2844 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Cux1P53564 Myc-206ENSMUST00000167731 1821 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Cux1P53564 Gabrr2-201ENSMUST00000024035 1820 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Cux1P53564 Vps54-201ENSMUST00000006221 4323 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cux1P53564 Gm42587-201ENSMUST00000198462 1981 ntBASIC16.31■□□□□ 0.2
Cux1P53564 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cux1P53564 St6galnac2-206ENSMUST00000144398 1683 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cux1P53564 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cux1P53564 Rergl-201ENSMUST00000170650 958 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cux1P53564 Gm38103-201ENSMUST00000191707 864 ntBASIC16.3■□□□□ 0.2
Cux1P53564 Gm42908-201ENSMUST00000197508 870 ntBASIC16.3■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 56.7 ms