Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Cenpn-203ENSMUST00000212263 1616 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Chmp6P0C0A3 Nfya-201ENSMUST00000046719 3645 ntAPPRIS ALT1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Chmp6P0C0A3 Clec4a3-201ENSMUST00000088468 1300 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Chmp6P0C0A3 Hepacam-201ENSMUST00000051839 3347 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Chmp6P0C0A3 Slc13a5-202ENSMUST00000137701 1746 ntTSL 5 BASIC11.77□□□□□ -0.53
Chmp6P0C0A3 Gm5739-201ENSMUST00000208601 1703 ntBASIC11.77□□□□□ -0.53
Chmp6P0C0A3 Ddx52-201ENSMUST00000049257 3194 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Chmp6P0C0A3 Pex19-202ENSMUST00000111252 2844 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Chmp6P0C0A3 Pa2g4-202ENSMUST00000131728 2483 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Chmp6P0C0A3 Atxn1l-202ENSMUST00000212605 7439 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Chmp6P0C0A3 Fyn-207ENSMUST00000146287 2135 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Chmp6P0C0A3 Rsph10b-203ENSMUST00000166847 2878 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
Chmp6P0C0A3 Mamdc2-201ENSMUST00000036069 3338 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Chmp6P0C0A3 Caprin1-202ENSMUST00000111147 4069 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Chmp6P0C0A3 Gm43482-201ENSMUST00000202797 1861 ntBASIC11.76□□□□□ -0.53
Chmp6P0C0A3 Pxdn-208ENSMUST00000220271 6377 ntTSL 5 BASIC11.76□□□□□ -0.53
Chmp6P0C0A3 Zer1-201ENSMUST00000044751 4100 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Chmp6P0C0A3 Angel1-201ENSMUST00000021682 3850 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Chmp6P0C0A3 Sh2d3c-202ENSMUST00000113242 3107 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Chmp6P0C0A3 Rcbtb2-223ENSMUST00000170677 3573 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Chmp6P0C0A3 Unkl-202ENSMUST00000039734 4779 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Chmp6P0C0A3 Myt1l-201ENSMUST00000021009 5027 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Chmp6P0C0A3 Ccdc136-207ENSMUST00000154619 3356 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Chmp6P0C0A3 Serf2-202ENSMUST00000110615 876 ntTSL 2 BASIC11.76□□□□□ -0.53
Chmp6P0C0A3 Spg20-203ENSMUST00000117341 2957 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Chmp6P0C0A3 Pcnp-203ENSMUST00000119981 901 ntTSL 3 BASIC11.76□□□□□ -0.53
Chmp6P0C0A3 Vmn2r-ps54-203ENSMUST00000150856 1142 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Chmp6P0C0A3 U2af1l4-218ENSMUST00000166960 747 ntTSL 3 BASIC11.76□□□□□ -0.53
Chmp6P0C0A3 2610316D01Rik-201ENSMUST00000181047 924 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Chmp6P0C0A3 Gm9081-201ENSMUST00000182346 991 ntBASIC11.76□□□□□ -0.53
Chmp6P0C0A3 Gm27003-201ENSMUST00000182590 497 ntTSL 5 BASIC11.76□□□□□ -0.53
Chmp6P0C0A3 Clec7a-202ENSMUST00000184581 707 ntAPPRIS P2 TSL 3 BASIC11.76□□□□□ -0.53
Chmp6P0C0A3 Abhd14a-204ENSMUST00000185334 1109 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Chmp6P0C0A3 Gm29292-201ENSMUST00000186169 766 ntTSL 3 BASIC11.76□□□□□ -0.53
Chmp6P0C0A3 Gm38210-201ENSMUST00000191944 809 ntBASIC11.76□□□□□ -0.53
Chmp6P0C0A3 Gm9884-201ENSMUST00000194343 1222 ntBASIC11.76□□□□□ -0.53
Chmp6P0C0A3 AA545190-201ENSMUST00000203495 1053 ntTSL 2 BASIC11.76□□□□□ -0.53
Chmp6P0C0A3 CT025531.1-201ENSMUST00000214534 622 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Chmp6P0C0A3 CT010486.3-201ENSMUST00000224555 811 ntBASIC11.76□□□□□ -0.53
Chmp6P0C0A3 Olfr71-201ENSMUST00000055401 939 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
Chmp6P0C0A3 Sept9-205ENSMUST00000106354 3869 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Chmp6P0C0A3 Tmem88b-201ENSMUST00000097742 3471 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Chmp6P0C0A3 Gm15987-201ENSMUST00000141700 2231 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Chmp6P0C0A3 Nxpe5-203ENSMUST00000159964 3585 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Chmp6P0C0A3 Gm21759-201ENSMUST00000178345 1828 ntBASIC11.76□□□□□ -0.53
Chmp6P0C0A3 Gsg1-203ENSMUST00000111910 1384 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Chmp6P0C0A3 Zfp280b-201ENSMUST00000061617 5097 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Chmp6P0C0A3 Tmem184b-202ENSMUST00000178522 3314 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Chmp6P0C0A3 Vipas39-203ENSMUST00000179379 2418 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Chmp6P0C0A3 Tab1-201ENSMUST00000023050 2931 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Chmp6P0C0A3 A530053M12Rik-201ENSMUST00000187918 1467 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Chmp6P0C0A3 Rpap2-202ENSMUST00000112650 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Chmp6P0C0A3 Gfra2-201ENSMUST00000022699 3472 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Chmp6P0C0A3 Tarm1-203ENSMUST00000203821 1535 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Chmp6P0C0A3 Plcd4-205ENSMUST00000113749 4648 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
Chmp6P0C0A3 Stat1-211ENSMUST00000189347 2588 ntAPPRIS ALT1 TSL 5 BASIC11.75□□□□□ -0.53
Chmp6P0C0A3 Tubb2b-201ENSMUST00000075774 2182 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Chmp6P0C0A3 Kcng4-201ENSMUST00000061828 3806 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Chmp6P0C0A3 Tsc22d4-202ENSMUST00000100539 3983 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Chmp6P0C0A3 Epha7-204ENSMUST00000108194 2323 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Chmp6P0C0A3 Zdhhc21-201ENSMUST00000030110 8763 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Chmp6P0C0A3 Ttll13-201ENSMUST00000058266 3010 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
Chmp6P0C0A3 Tgfb1i1-201ENSMUST00000070656 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Chmp6P0C0A3 Myo18a-201ENSMUST00000000645 7307 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
Chmp6P0C0A3 Myo18a-203ENSMUST00000092887 7304 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Chmp6P0C0A3 Sorbs3-203ENSMUST00000227653 3061 ntAPPRIS ALT2 BASIC11.75□□□□□ -0.53
Chmp6P0C0A3 Gm14592-201ENSMUST00000117201 560 ntBASIC11.75□□□□□ -0.53
Chmp6P0C0A3 Vps25-205ENSMUST00000121331 790 ntTSL 2 BASIC11.75□□□□□ -0.53
Chmp6P0C0A3 Gm3828-201ENSMUST00000121817 257 ntBASIC11.75□□□□□ -0.53
Chmp6P0C0A3 AI854703-202ENSMUST00000154570 3806 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
Chmp6P0C0A3 Gm12406-201ENSMUST00000155382 697 ntTSL 3 BASIC11.75□□□□□ -0.53
Chmp6P0C0A3 Pax4-202ENSMUST00000164519 1229 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Chmp6P0C0A3 Pax4-203ENSMUST00000171089 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Chmp6P0C0A3 AC238811.4-201ENSMUST00000178019 1246 ntBASIC11.75□□□□□ -0.53
Chmp6P0C0A3 AC238940.3-201ENSMUST00000178830 1246 ntBASIC11.75□□□□□ -0.53
Chmp6P0C0A3 Rwdd2a-202ENSMUST00000179212 1130 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Chmp6P0C0A3 Gm3793-201ENSMUST00000204973 672 ntBASIC11.75□□□□□ -0.53
Chmp6P0C0A3 Gm44814-201ENSMUST00000207018 434 ntBASIC11.75□□□□□ -0.53
Chmp6P0C0A3 Saa-ps-201ENSMUST00000211148 320 ntBASIC11.75□□□□□ -0.53
Chmp6P0C0A3 Gm34045-201ENSMUST00000217700 988 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Chmp6P0C0A3 Gm9102-201ENSMUST00000219250 465 ntBASIC11.75□□□□□ -0.53
Chmp6P0C0A3 Eny2-204ENSMUST00000226827 558 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
Chmp6P0C0A3 Sapcd1-201ENSMUST00000040151 935 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Chmp6P0C0A3 1700001K19Rik-201ENSMUST00000070659 955 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Chmp6P0C0A3 Naca-201ENSMUST00000073868 885 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Chmp6P0C0A3 Odf2l-202ENSMUST00000098538 2564 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Chmp6P0C0A3 Sparc-207ENSMUST00000213866 1366 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
Chmp6P0C0A3 Shank2-205ENSMUST00000146006 7666 ntTSL 2 BASIC11.75□□□□□ -0.53
Chmp6P0C0A3 Gm20758-201ENSMUST00000220339 2171 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Chmp6P0C0A3 Asb1-201ENSMUST00000027538 5826 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Chmp6P0C0A3 Thoc6-202ENSMUST00000095579 1450 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Chmp6P0C0A3 Gm10684-201ENSMUST00000098827 2203 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Chmp6P0C0A3 Brat1-203ENSMUST00000110806 3854 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Chmp6P0C0A3 Txlng-201ENSMUST00000041370 3862 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Chmp6P0C0A3 1700030K09Rik-202ENSMUST00000121902 2373 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
Chmp6P0C0A3 Calu-201ENSMUST00000031779 3229 ntAPPRIS P5 TSL 1 (best) BASIC11.75□□□□□ -0.53
Chmp6P0C0A3 Mkx-201ENSMUST00000079788 3202 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Chmp6P0C0A3 Armt1-201ENSMUST00000095893 2429 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Chmp6P0C0A3 Gm38271-201ENSMUST00000192296 1603 ntBASIC11.75□□□□□ -0.53
Chmp6P0C0A3 C530044C16Rik-201ENSMUST00000204275 1624 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 47.4 ms