Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Tcn2-207ENSMUST00000109993 2027 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Bsnd-201ENSMUST00000054472 2756 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Serac1-202ENSMUST00000097432 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Gmps-201ENSMUST00000029405 8105 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Sema4d-201ENSMUST00000021900 4482 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Lrpap1-201ENSMUST00000030986 2981 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Olfr742-203ENSMUST00000217437 2244 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Slc6a2-201ENSMUST00000072939 6187 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Zeb2-203ENSMUST00000076836 3913 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Gpcpd1-202ENSMUST00000060955 3686 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Tcim-201ENSMUST00000052622 1805 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
Smc1aQ9CU62 Cd19-201ENSMUST00000032968 2432 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Smc1aQ9CU62 Slc45a4-202ENSMUST00000076224 4240 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Smc1aQ9CU62 Nup210-202ENSMUST00000113509 6893 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Smc1aQ9CU62 Foxh1-201ENSMUST00000037824 1306 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Smc1aQ9CU62 Oprm1-230ENSMUST00000154906 2039 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Smc1aQ9CU62 Trappc9-202ENSMUST00000089770 4047 ntAPPRIS P4 TSL 1 (best) BASIC12.13□□□□□ -0.47
Smc1aQ9CU62 Arhgap6-204ENSMUST00000112129 2487 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Smc1aQ9CU62 AC130823.1-201ENSMUST00000228929 1549 ntBASIC12.13□□□□□ -0.47
Smc1aQ9CU62 Rps10-202ENSMUST00000114881 604 ntAPPRIS P1 TSL 3 BASIC12.13□□□□□ -0.47
Smc1aQ9CU62 Rhox3c-202ENSMUST00000115189 648 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Smc1aQ9CU62 Gm14395-201ENSMUST00000120494 563 ntBASIC12.13□□□□□ -0.47
Smc1aQ9CU62 Gm22146-201ENSMUST00000157397 288 ntBASIC12.13□□□□□ -0.47
Smc1aQ9CU62 Gm16553-201ENSMUST00000160490 716 ntTSL 3 BASIC12.13□□□□□ -0.47
Smc1aQ9CU62 Slpi-202ENSMUST00000165980 488 ntAPPRIS ALT2 TSL 3 BASIC12.13□□□□□ -0.47
Smc1aQ9CU62 Gm21844-201ENSMUST00000178699 663 ntTSL 3 BASIC12.13□□□□□ -0.47
Smc1aQ9CU62 Park2-204ENSMUST00000179624 1108 ntTSL 5 BASIC12.13□□□□□ -0.47
Smc1aQ9CU62 Gm10100-201ENSMUST00000179726 363 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
Smc1aQ9CU62 Rhox3a2-204ENSMUST00000184565 823 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Smc1aQ9CU62 Vmn1r205-201ENSMUST00000185475 951 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
Smc1aQ9CU62 Gm43163-201ENSMUST00000196571 442 ntBASIC12.13□□□□□ -0.47
Smc1aQ9CU62 2010109P13Rik-201ENSMUST00000204605 392 ntBASIC12.13□□□□□ -0.47
Smc1aQ9CU62 Gm30671-201ENSMUST00000214898 318 ntBASIC12.13□□□□□ -0.47
Smc1aQ9CU62 Gm4811-201ENSMUST00000220879 1220 ntBASIC12.13□□□□□ -0.47
Smc1aQ9CU62 Gm18065-201ENSMUST00000221395 526 ntBASIC12.13□□□□□ -0.47
Smc1aQ9CU62 AC126799.1-201ENSMUST00000221976 246 ntBASIC12.13□□□□□ -0.47
Smc1aQ9CU62 CT010506.1-201ENSMUST00000223673 349 ntBASIC12.13□□□□□ -0.47
Smc1aQ9CU62 Rps10-ps1-201ENSMUST00000074353 495 ntBASIC12.13□□□□□ -0.47
Smc1aQ9CU62 Rhox3e-201ENSMUST00000081327 648 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Smc1aQ9CU62 n-R5s185-201ENSMUST00000083953 119 ntBASIC12.13□□□□□ -0.47
Smc1aQ9CU62 Rhox3a2-201ENSMUST00000096459 828 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Smc1aQ9CU62 Sptb-202ENSMUST00000166101 8084 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
Smc1aQ9CU62 Inf2-201ENSMUST00000101029 4001 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Smc1aQ9CU62 Clcn6-205ENSMUST00000137724 5198 ntAPPRIS ALT1 TSL 5 BASIC12.13□□□□□ -0.47
Smc1aQ9CU62 Ptprr-206ENSMUST00000148731 2511 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
Smc1aQ9CU62 Gm17213-201ENSMUST00000165161 1360 ntBASIC12.13□□□□□ -0.47
Smc1aQ9CU62 Cacna2d4-201ENSMUST00000037434 5803 ntAPPRIS P3 TSL 2 BASIC12.13□□□□□ -0.47
Smc1aQ9CU62 Tmprss4-201ENSMUST00000034599 2284 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Smc1aQ9CU62 Aplp2-202ENSMUST00000079758 3504 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Smc1aQ9CU62 Ube3a-203ENSMUST00000200758 9856 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
Smc1aQ9CU62 Il1rap-202ENSMUST00000096129 4438 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Smc1aQ9CU62 Cct3-208ENSMUST00000168062 1943 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Smc1aQ9CU62 Qars-203ENSMUST00000134939 2374 ntTSL 5 BASIC12.13□□□□□ -0.47
Smc1aQ9CU62 Traf3ip3-201ENSMUST00000043550 2122 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Smc1aQ9CU62 Traf3ip3-212ENSMUST00000192020 1854 ntAPPRIS P2 TSL 5 BASIC12.12□□□□□ -0.47
Smc1aQ9CU62 Pik3cb-201ENSMUST00000035037 6478 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Smc1aQ9CU62 Gm43372-201ENSMUST00000202662 3016 ntBASIC12.12□□□□□ -0.47
Smc1aQ9CU62 Spaar-201ENSMUST00000131248 4086 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Smc1aQ9CU62 Synpo2l-201ENSMUST00000057090 4394 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Smc1aQ9CU62 Crygc-202ENSMUST00000114064 612 ntAPPRIS ALT1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Smc1aQ9CU62 Olfr1267-ps1-201ENSMUST00000118957 930 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
Smc1aQ9CU62 Gm12367-202ENSMUST00000146909 2105 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Smc1aQ9CU62 Gm8451-201ENSMUST00000170338 447 ntBASIC12.12□□□□□ -0.47
Smc1aQ9CU62 Gm17825-201ENSMUST00000206836 794 ntBASIC12.12□□□□□ -0.47
Smc1aQ9CU62 Gm45682-201ENSMUST00000209434 1256 ntTSL 5 BASIC12.12□□□□□ -0.47
Smc1aQ9CU62 Nutf2-202ENSMUST00000212042 645 ntAPPRIS P1 TSL 3 BASIC12.12□□□□□ -0.47
Smc1aQ9CU62 AC153887.1-201ENSMUST00000219154 1253 ntTSL 5 BASIC12.12□□□□□ -0.47
Smc1aQ9CU62 Gm18968-201ENSMUST00000221319 862 ntBASIC12.12□□□□□ -0.47
Smc1aQ9CU62 Olfr335-ps-201ENSMUST00000223545 939 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
Smc1aQ9CU62 AC164618.2-201ENSMUST00000224770 573 ntBASIC12.12□□□□□ -0.47
Smc1aQ9CU62 Pcgf5-204ENSMUST00000224772 1266 ntAPPRIS ALT1 BASIC12.12□□□□□ -0.47
Smc1aQ9CU62 Fth1-201ENSMUST00000025563 866 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Smc1aQ9CU62 Prss51-201ENSMUST00000063785 961 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Smc1aQ9CU62 Gm7536-201ENSMUST00000077389 444 ntBASIC12.12□□□□□ -0.47
Smc1aQ9CU62 Olfr411-201ENSMUST00000080365 1049 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
Smc1aQ9CU62 Gm5453-201ENSMUST00000080866 447 ntBASIC12.12□□□□□ -0.47
Smc1aQ9CU62 Gm13306-201ENSMUST00000098122 418 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Smc1aQ9CU62 Celf1-205ENSMUST00000111449 4441 ntAPPRIS ALT1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Smc1aQ9CU62 Nos3-202ENSMUST00000115090 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Smc1aQ9CU62 4833411C07Rik-202ENSMUST00000207914 1568 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Smc1aQ9CU62 Hmgb2-201ENSMUST00000067925 2628 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Smc1aQ9CU62 Qrfpr-203ENSMUST00000197447 1690 ntTSL 5 BASIC12.12□□□□□ -0.47
Smc1aQ9CU62 E130308A19Rik-202ENSMUST00000070150 10856 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Smc1aQ9CU62 Gpr37-202ENSMUST00000200812 3035 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Smc1aQ9CU62 Slc7a1-201ENSMUST00000048116 7179 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Smc1aQ9CU62 Bpifb9b-201ENSMUST00000088921 2067 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Smc1aQ9CU62 Fga-202ENSMUST00000166581 2587 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Smc1aQ9CU62 Sipa1l3-215ENSMUST00000183096 7713 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Smc1aQ9CU62 Sipa1l3-201ENSMUST00000085809 7713 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Smc1aQ9CU62 Tpp2-201ENSMUST00000087933 4649 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Smc1aQ9CU62 Bbs2-201ENSMUST00000034206 3064 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Smc1aQ9CU62 Pax3-201ENSMUST00000004994 3078 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Smc1aQ9CU62 Rasgrp4-213ENSMUST00000204845 3182 ntTSL 5 BASIC12.12□□□□□ -0.47
Smc1aQ9CU62 Col19a1-202ENSMUST00000115244 4266 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Smc1aQ9CU62 Htr2c-202ENSMUST00000096299 4883 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Smc1aQ9CU62 B4galt4-201ENSMUST00000023482 2304 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Smc1aQ9CU62 Ank2-214ENSMUST00000182547 2428 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Smc1aQ9CU62 Avil-201ENSMUST00000026500 3033 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Smc1aQ9CU62 Ugt1a7c-201ENSMUST00000058237 3231 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
Smc1aQ9CU62 Lhx9-202ENSMUST00000046870 3645 ntAPPRIS ALT1 TSL 5 BASIC12.11□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 42.6 ms