Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Rufy2-202ENSMUST00000119567 4130 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Vps53Q8CCB4 Slc38a3-203ENSMUST00000177567 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Vps53Q8CCB4 Slc38a3-209ENSMUST00000193932 2463 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Vps53Q8CCB4 Cpne9-201ENSMUST00000041203 2777 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Vps53Q8CCB4 Imp4-201ENSMUST00000027303 5836 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Vps53Q8CCB4 Styx-205ENSMUST00000226873 12974 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Vps53Q8CCB4 Hddc3-201ENSMUST00000032747 1510 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Dpep2-201ENSMUST00000034373 1702 ntAPPRIS P4 TSL 1 (best) BASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Gm21759-201ENSMUST00000178345 1828 ntBASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Syt14-201ENSMUST00000016344 1904 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Clp1-201ENSMUST00000028475 1912 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Mpl-202ENSMUST00000102671 2934 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Polm-201ENSMUST00000020767 2924 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Pigq-219ENSMUST00000208071 2926 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Mefv-202ENSMUST00000100222 3249 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Vps53Q8CCB4 D930020B18Rik-201ENSMUST00000120642 3335 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Ric8a-201ENSMUST00000026558 3406 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Igsf9-201ENSMUST00000052629 4133 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Slc36a1-203ENSMUST00000108872 5264 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Nr4a2-201ENSMUST00000028166 3568 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Entpd8-201ENSMUST00000044078 2299 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Vps53Q8CCB4 AI593442-201ENSMUST00000098768 5615 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Ribc2-201ENSMUST00000023067 1652 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Hacl1-212ENSMUST00000167066 1566 ntTSL 5 BASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Gm5641-201ENSMUST00000091130 1488 ntBASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Wipf1-203ENSMUST00000102680 4032 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Arpc3-202ENSMUST00000102525 899 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Mir453-201ENSMUST00000104732 82 ntBASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Vsir-202ENSMUST00000105459 1290 ntTSL 5 BASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Gm8302-201ENSMUST00000119217 852 ntBASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Nr5a1os-201ENSMUST00000146954 926 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Gm11642-201ENSMUST00000150442 440 ntTSL 5 BASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Gm16030-201ENSMUST00000159098 603 ntBASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Gm26555-201ENSMUST00000180452 1037 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Gm7719-201ENSMUST00000182374 975 ntBASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Nmbr-206ENSMUST00000190114 662 ntTSL 3 BASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Gm5870-201ENSMUST00000196461 282 ntBASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Gm42953-201ENSMUST00000199363 581 ntTSL 3 BASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Bcl2l12-205ENSMUST00000207755 605 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Fmnl1-207ENSMUST00000218163 3824 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Park2-210ENSMUST00000218435 865 ntTSL 5 BASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Tspo2-201ENSMUST00000024794 956 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Gm26640-201ENSMUST00000180809 3524 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Chek1-202ENSMUST00000172702 3797 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Dnmt1-202ENSMUST00000177754 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Gm9244-201ENSMUST00000056767 2129 ntBASIC12.62□□□□□ -0.39
Vps53Q8CCB4 D830039M14Rik-202ENSMUST00000217740 3362 ntBASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Nampt-201ENSMUST00000020886 4527 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Slc25a51-201ENSMUST00000107796 4433 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Il34-201ENSMUST00000076846 1709 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Gm38271-201ENSMUST00000192296 1603 ntBASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Tarm1-203ENSMUST00000203821 1535 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Spag6-201ENSMUST00000095132 2458 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Ngfr-201ENSMUST00000000122 3446 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Ccdc129-201ENSMUST00000044729 3431 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Ttll7-205ENSMUST00000170055 6075 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Slc13a5-205ENSMUST00000208056 3111 ntTSL 5 BASIC12.62□□□□□ -0.39
Vps53Q8CCB4 4932431P20Rik-201ENSMUST00000098602 1340 ntBASIC12.62□□□□□ -0.39
Vps53Q8CCB4 Ttpal-207ENSMUST00000171696 4522 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Vps53Q8CCB4 Gm46430-201ENSMUST00000220478 1989 ntTSL 3 BASIC12.61□□□□□ -0.39
Vps53Q8CCB4 Tsc22d3-201ENSMUST00000055738 1974 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Vps53Q8CCB4 Atxn1l-202ENSMUST00000212605 7439 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Vps53Q8CCB4 Ndrg4-203ENSMUST00000080666 2738 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Vps53Q8CCB4 Ptprh-201ENSMUST00000049113 3495 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Vps53Q8CCB4 AC121870.2-201ENSMUST00000214343 1870 ntBASIC12.61□□□□□ -0.39
Vps53Q8CCB4 4933413J09Rik-202ENSMUST00000059648 3387 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Vps53Q8CCB4 Rad51ap2-201ENSMUST00000124065 3175 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
Vps53Q8CCB4 Pabpc4-203ENSMUST00000106241 3050 ntAPPRIS P5 TSL 5 BASIC12.61□□□□□ -0.39
Vps53Q8CCB4 Gm10912-201ENSMUST00000104891 1661 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
Vps53Q8CCB4 Fyco1-202ENSMUST00000167595 7692 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Vps53Q8CCB4 Zmynd8-221ENSMUST00000177633 5093 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Vps53Q8CCB4 Lrrc61-201ENSMUST00000101436 2674 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Vps53Q8CCB4 Zfp384-205ENSMUST00000112424 2673 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Vps53Q8CCB4 Gm37651-201ENSMUST00000194679 1494 ntBASIC12.61□□□□□ -0.39
Vps53Q8CCB4 Vgll4-201ENSMUST00000032459 2028 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Vps53Q8CCB4 Mettl14-204ENSMUST00000174323 4202 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Vps53Q8CCB4 Airn-205ENSMUST00000161890 1375 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Vps53Q8CCB4 4833422M21Rik-203ENSMUST00000181747 1365 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Vps53Q8CCB4 Atg16l2-201ENSMUST00000120267 6459 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Vps53Q8CCB4 Oprl1-204ENSMUST00000108767 1248 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Vps53Q8CCB4 Gm12179-201ENSMUST00000118344 1272 ntBASIC12.61□□□□□ -0.39
Vps53Q8CCB4 Gm11578-201ENSMUST00000118530 459 ntBASIC12.61□□□□□ -0.39
Vps53Q8CCB4 Gm14213-201ENSMUST00000119778 768 ntBASIC12.61□□□□□ -0.39
Vps53Q8CCB4 1700123M08Rik-202ENSMUST00000146154 770 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Vps53Q8CCB4 Gm12744-201ENSMUST00000146976 519 ntTSL 3 BASIC12.61□□□□□ -0.39
Vps53Q8CCB4 Gm25830-201ENSMUST00000158923 132 ntBASIC12.61□□□□□ -0.39
Vps53Q8CCB4 Fxyd5-209ENSMUST00000162087 762 ntAPPRIS P3 TSL 3 BASIC12.61□□□□□ -0.39
Vps53Q8CCB4 Zfp637-210ENSMUST00000164472 1098 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Vps53Q8CCB4 Gm17070-201ENSMUST00000170463 784 ntBASIC12.61□□□□□ -0.39
Vps53Q8CCB4 Use1-201ENSMUST00000019169 854 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Vps53Q8CCB4 Zfp655-203ENSMUST00000196069 1150 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Vps53Q8CCB4 1700017M07Rik-201ENSMUST00000198307 940 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Vps53Q8CCB4 Nt5dc1-206ENSMUST00000213269 802 ntTSL 5 BASIC12.61□□□□□ -0.39
Vps53Q8CCB4 Hsd17b3-201ENSMUST00000039832 1131 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Vps53Q8CCB4 Olfr1395-201ENSMUST00000059379 954 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
Vps53Q8CCB4 Hectd4-201ENSMUST00000042614 15482 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Vps53Q8CCB4 Slc13a5-202ENSMUST00000137701 1746 ntTSL 5 BASIC12.61□□□□□ -0.39
Vps53Q8CCB4 Gm31108-201ENSMUST00000204101 1633 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Vps53Q8CCB4 Ddx54-201ENSMUST00000031598 4322 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Vps53Q8CCB4 Lpin3-204ENSMUST00000109457 3215 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 41.6 ms