Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Zfp646-201ENSMUST00000050383 6310 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Ldb3-202ENSMUST00000022328 2468 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Eya2-201ENSMUST00000063433 2460 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Slc6a12-209ENSMUST00000171008 1674 ntAPPRIS ALT2 TSL 5 BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Gm17151-201ENSMUST00000105760 367 ntTSL 3 BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Eapp-202ENSMUST00000110713 886 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Snx29-202ENSMUST00000115814 1125 ntTSL 5 BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Gm13668-201ENSMUST00000119237 1001 ntBASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Fam187b-203ENSMUST00000129773 1213 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 4930583K01Rik-201ENSMUST00000138180 925 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Gm5244-201ENSMUST00000164001 339 ntBASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Gm38210-201ENSMUST00000191944 809 ntBASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Gm37365-201ENSMUST00000193109 409 ntBASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Gm31520-203ENSMUST00000204874 647 ntTSL 3 BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Rpl15-ps5-201ENSMUST00000205636 605 ntBASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Gm11149-203ENSMUST00000215465 805 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Gm5178-201ENSMUST00000219380 898 ntBASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 AC164429.1-201ENSMUST00000224210 518 ntBASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 AC133499.1-201ENSMUST00000227778 1097 ntAPPRIS P1 BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Eif4ebp3-201ENSMUST00000036765 744 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Gm10135-201ENSMUST00000043711 252 ntAPPRIS P1 TSL 5 BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Tnxb-201ENSMUST00000087399 12209 ntAPPRIS P1 TSL 5 BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Zbtb43-203ENSMUST00000113156 1828 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Pmp22-201ENSMUST00000018361 1800 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Enam-201ENSMUST00000031222 5483 ntAPPRIS P2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Tmem184b-202ENSMUST00000178522 3314 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Fcgr2b-204ENSMUST00000159969 1578 ntAPPRIS P4 TSL 1 (best) BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Prkcd-205ENSMUST00000112207 2139 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Gm43334-201ENSMUST00000197740 1318 ntBASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Itga11-201ENSMUST00000034774 4969 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 1810019N24Rik-201ENSMUST00000181128 1474 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Scamp2-201ENSMUST00000045791 2340 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 4930432L08Rik-201ENSMUST00000132154 1608 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Optc-205ENSMUST00000153617 1615 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Tmem88b-201ENSMUST00000097742 3471 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 4930402K13Rik-201ENSMUST00000059967 1781 ntAPPRIS P1 BASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Plcd4-205ENSMUST00000113749 4648 ntAPPRIS ALT2 TSL 5 BASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Patz1-207ENSMUST00000134089 1904 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Riox2-202ENSMUST00000120667 2200 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Otof-201ENSMUST00000074171 7129 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Itgal-205ENSMUST00000170971 3662 ntAPPRIS ALT2 TSL 5 BASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Lman1-201ENSMUST00000048260 3563 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Sod3-201ENSMUST00000101208 3738 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Rbbp5-202ENSMUST00000187505 1977 ntTSL 5 BASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Gpm6b-209ENSMUST00000112235 4480 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Mylk3-202ENSMUST00000121972 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Myocd-203ENSMUST00000108695 5114 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Adcy8-202ENSMUST00000228014 6900 ntAPPRIS ALT2 BASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Bglap3-203ENSMUST00000107543 1047 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Srd5a3-202ENSMUST00000113506 1241 ntAPPRIS ALT2 TSL 5 BASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Hmgn2-208ENSMUST00000136327 772 ntTSL 2 BASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Gm25830-201ENSMUST00000158923 132 ntBASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Gm17192-201ENSMUST00000169031 511 ntBASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Gm13290-201ENSMUST00000177806 968 ntAPPRIS P1 BASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Gm26982-201ENSMUST00000182250 1151 ntBASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Gm8492-201ENSMUST00000182375 987 ntBASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Scgb2b27-203ENSMUST00000185399 702 ntAPPRIS ALT2 TSL 2 BASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Gm3289-201ENSMUST00000200819 756 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 AC120394.2-201ENSMUST00000213905 702 ntTSL 5 BASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Gm40652-201ENSMUST00000218944 895 ntTSL 5 BASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Prss51-204ENSMUST00000224112 1042 ntAPPRIS P1 BASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Ap3s1-202ENSMUST00000224622 978 ntBASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Nnmt-201ENSMUST00000034808 1043 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Hcst-201ENSMUST00000075062 442 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Nhsl1-201ENSMUST00000037341 7321 ntAPPRIS P3 TSL 5 BASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Pard3-213ENSMUST00000160766 4949 ntAPPRIS ALT2 TSL 5 BASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Tfip11-201ENSMUST00000031288 3560 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Il27ra-201ENSMUST00000005601 2664 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Agbl4-202ENSMUST00000097920 1798 ntAPPRIS P4 TSL 1 (best) BASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Gm31718-201ENSMUST00000212406 1646 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Krt34-201ENSMUST00000056362 1609 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Dglucy-204ENSMUST00000110073 3184 ntAPPRIS ALT2 TSL 5 BASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Platr19-201ENSMUST00000171380 1466 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Pde6c-202ENSMUST00000112329 2895 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 F730016J06Rik-201ENSMUST00000126140 1344 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Elmo2-201ENSMUST00000071699 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Gm28624-201ENSMUST00000186430 2131 ntBASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Cldn19-202ENSMUST00000094823 4168 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Zc3h12a-201ENSMUST00000036188 2755 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 Rufy4-202ENSMUST00000127134 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
Upf3bQ3ULL6 AC113282.5-201ENSMUST00000224330 1679 ntAPPRIS P1 BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Cycs-202ENSMUST00000161401 3123 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Galm-201ENSMUST00000039205 2314 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Impdh2-ps-201ENSMUST00000120826 1545 ntBASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Gm18210-201ENSMUST00000209001 1524 ntBASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Xlr4c-201ENSMUST00000068551 1500 ntAPPRIS P1 TSL 5 BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Cep250-204ENSMUST00000109619 7977 ntAPPRIS P4 TSL 5 BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Cep250-201ENSMUST00000039994 7979 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Lrrc4-201ENSMUST00000062304 3615 ntAPPRIS P1 BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Zmym3-209ENSMUST00000121520 5564 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Klhdc10-206ENSMUST00000144272 1387 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Cd276-201ENSMUST00000039788 3186 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Rnf20-201ENSMUST00000029989 4154 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 B4galnt2-201ENSMUST00000038343 1722 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Snw1-201ENSMUST00000021428 2232 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Man2c1-201ENSMUST00000034836 3215 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Tiam1-203ENSMUST00000114122 4596 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Zdbf2-202ENSMUST00000114132 12629 ntAPPRIS P1 TSL 5 BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Mier1-204ENSMUST00000106857 4752 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Upf3bQ3ULL6 Arrb2-201ENSMUST00000079056 1443 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Retrieved 100 of 76,532 protein–RNA pairs in 44.5 ms