Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Cbfa2t3-203ENSMUST00000127984 7645 ntAPPRIS P3 TSL 1 (best) BASIC10.68□□□□□ -0.7
Ccdc28bQ8CEG5 Wfdc8-202ENSMUST00000109338 1794 ntAPPRIS P3 TSL 1 (best) BASIC10.68□□□□□ -0.7
Ccdc28bQ8CEG5 Col4a6-201ENSMUST00000101205 6648 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Ccdc28bQ8CEG5 Crry-ps-201ENSMUST00000079090 1309 ntBASIC10.68□□□□□ -0.7
Ccdc28bQ8CEG5 Erbb3-201ENSMUST00000082059 6016 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Ccdc28bQ8CEG5 Mst1r-201ENSMUST00000035203 4722 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Ccdc28bQ8CEG5 Gm11596-201ENSMUST00000105058 1079 ntAPPRIS P1 BASIC10.68□□□□□ -0.7
Ccdc28bQ8CEG5 Gm12216-202ENSMUST00000120776 826 ntAPPRIS ALT2 TSL 2 BASIC10.68□□□□□ -0.7
Ccdc28bQ8CEG5 Gm8199-201ENSMUST00000121323 823 ntBASIC10.68□□□□□ -0.7
Ccdc28bQ8CEG5 Gm14397-201ENSMUST00000124728 576 ntTSL 3 BASIC10.68□□□□□ -0.7
Ccdc28bQ8CEG5 Cfap100-204ENSMUST00000134224 849 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Ccdc28bQ8CEG5 4931406G06Rik-201ENSMUST00000147848 1252 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Ccdc28bQ8CEG5 Cmtm1-201ENSMUST00000159039 1130 ntAPPRIS P2 TSL 1 (best) BASIC10.68□□□□□ -0.7
Ccdc28bQ8CEG5 Spata3-211ENSMUST00000159876 760 ntAPPRIS ALT2 TSL 5 BASIC10.68□□□□□ -0.7
Ccdc28bQ8CEG5 Mir7085-201ENSMUST00000184353 66 ntBASIC10.68□□□□□ -0.7
Ccdc28bQ8CEG5 Gm7255-201ENSMUST00000187371 908 ntBASIC10.68□□□□□ -0.7
Ccdc28bQ8CEG5 Gm29543-201ENSMUST00000188138 967 ntBASIC10.68□□□□□ -0.7
Ccdc28bQ8CEG5 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC10.68□□□□□ -0.7
Ccdc28bQ8CEG5 Gm43916-201ENSMUST00000205062 967 ntBASIC10.68□□□□□ -0.7
Ccdc28bQ8CEG5 4930448A20Rik-201ENSMUST00000205988 1034 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Ccdc28bQ8CEG5 AC107638.1-201ENSMUST00000213690 1061 ntBASIC10.68□□□□□ -0.7
Ccdc28bQ8CEG5 CT573047.1-201ENSMUST00000223652 851 ntBASIC10.68□□□□□ -0.7
Ccdc28bQ8CEG5 Ccl21a-201ENSMUST00000095114 870 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Ccdc28bQ8CEG5 Rgs17-203ENSMUST00000117676 1651 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Ccdc28bQ8CEG5 Mthfsd-201ENSMUST00000047282 8312 ntAPPRIS P3 TSL 1 (best) BASIC10.68□□□□□ -0.7
Ccdc28bQ8CEG5 Bcorl1-203ENSMUST00000136348 7446 ntAPPRIS P1 TSL 5 BASIC10.68□□□□□ -0.7
Ccdc28bQ8CEG5 Myh9-201ENSMUST00000016771 7433 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Ccdc28bQ8CEG5 Prox1-203ENSMUST00000177288 3144 ntAPPRIS P1 TSL 5 BASIC10.68□□□□□ -0.7
Ccdc28bQ8CEG5 Cdyl-201ENSMUST00000075220 3470 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Ccdc28bQ8CEG5 Ilf3-204ENSMUST00000213603 3430 ntAPPRIS ALT2 TSL 5 BASIC10.68□□□□□ -0.7
Ccdc28bQ8CEG5 Dst-205ENSMUST00000182314 2643 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Ccdc28bQ8CEG5 Babam2-204ENSMUST00000114515 1497 ntTSL 5 BASIC10.68□□□□□ -0.7
Ccdc28bQ8CEG5 Specc1l-204ENSMUST00000218766 4725 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Atp5g1-201ENSMUST00000090541 4715 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Syt11-203ENSMUST00000107505 5020 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Olfr478-202ENSMUST00000210173 2477 ntAPPRIS P1 TSL 3 BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Dync1i2-202ENSMUST00000100028 2097 ntTSL 5 BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Abcf3-201ENSMUST00000003319 3090 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Ssrp1-209ENSMUST00000168266 2721 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Hal-202ENSMUST00000129421 5319 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Tmem154-201ENSMUST00000107682 3342 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Parp3-201ENSMUST00000067218 2962 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Pear1-201ENSMUST00000029714 4260 ntAPPRIS P1 TSL 5 BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Pde2a-201ENSMUST00000163751 4218 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Gm37567-201ENSMUST00000193241 2279 ntBASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Gm3415-201ENSMUST00000110595 924 ntAPPRIS ALT2 TSL 5 BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Gm3409-201ENSMUST00000110597 952 ntAPPRIS ALT2 TSL 5 BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Gm16066-201ENSMUST00000118575 1086 ntTSL 3 BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Zar1l-201ENSMUST00000118769 895 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Csf1-204ENSMUST00000120654 821 ntTSL 3 BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Sgcg-202ENSMUST00000121148 1298 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Gm12715-201ENSMUST00000121430 1128 ntBASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Gm6039-201ENSMUST00000121667 1250 ntBASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 4930589P08Rik-201ENSMUST00000129097 1084 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Gm24844-201ENSMUST00000158679 127 ntBASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Sbsn-205ENSMUST00000182721 677 ntAPPRIS ALT2 TSL 3 BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Gm37284-201ENSMUST00000193607 539 ntBASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Gm37388-201ENSMUST00000193984 429 ntAPPRIS P1 TSL 5 BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Pmvk-204ENSMUST00000198440 978 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Gm45881-201ENSMUST00000210659 517 ntTSL 5 BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 AC153962.4-201ENSMUST00000217878 242 ntBASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 AC125350.2-201ENSMUST00000224737 727 ntBASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Nit2-201ENSMUST00000023432 1280 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Cox6a2-201ENSMUST00000033049 680 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Cmtm2b-201ENSMUST00000041973 880 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Vmn1r220-201ENSMUST00000072385 897 ntAPPRIS P1 BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Gm3402-202ENSMUST00000077133 924 ntAPPRIS ALT2 TSL 5 BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Vmn1r212-201ENSMUST00000095960 1164 ntAPPRIS P1 BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Prkx-201ENSMUST00000036333 4146 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Slc6a5-203ENSMUST00000207753 6966 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 P3h1-202ENSMUST00000081606 2820 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Slc45a4-207ENSMUST00000151288 7509 ntAPPRIS P2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Adgb-201ENSMUST00000045328 1893 ntTSL 2 BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Prg4-201ENSMUST00000006171 1869 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Gm37798-201ENSMUST00000193026 2169 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Epb41-202ENSMUST00000054917 4948 ntAPPRIS ALT2 TSL 5 BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 1700036A12Rik-202ENSMUST00000190053 1828 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Gm37052-201ENSMUST00000194929 1831 ntBASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Uox-201ENSMUST00000029837 2737 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Srcap-201ENSMUST00000066582 4545 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Mtfr1-204ENSMUST00000130645 2953 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Gm32200-201ENSMUST00000192778 2385 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 4930503B20Rik-201ENSMUST00000049703 2080 ntAPPRIS P2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Gm42815-201ENSMUST00000198787 1470 ntBASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Wdr78-202ENSMUST00000036557 3479 ntTSL 5 BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 3632454L22Rik-202ENSMUST00000153610 2872 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Lrrn4cl-201ENSMUST00000096257 2583 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Syncrip-208ENSMUST00000174282 3404 ntAPPRIS ALT1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Ccdc28bQ8CEG5 Apobr-201ENSMUST00000039522 3685 ntAPPRIS P2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Ccdc28bQ8CEG5 Fam184b-201ENSMUST00000016023 4236 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Ccdc28bQ8CEG5 Gm12912-201ENSMUST00000121596 1381 ntBASIC10.66□□□□□ -0.7
Ccdc28bQ8CEG5 Gm5822-201ENSMUST00000161562 1378 ntBASIC10.66□□□□□ -0.7
Ccdc28bQ8CEG5 5830437K03Rik-201ENSMUST00000199219 1379 ntBASIC10.66□□□□□ -0.7
Ccdc28bQ8CEG5 Dock6-207ENSMUST00000217336 6880 ntAPPRIS P2 TSL 5 BASIC10.66□□□□□ -0.7
Ccdc28bQ8CEG5 Itga3-202ENSMUST00000107739 4636 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Ccdc28bQ8CEG5 4930432L08Rik-201ENSMUST00000132154 1608 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Ccdc28bQ8CEG5 Fbxl12-206ENSMUST00000148631 3756 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Ccdc28bQ8CEG5 Atad5-202ENSMUST00000108239 7266 ntAPPRIS ALT2 TSL 5 BASIC10.66□□□□□ -0.7
Ccdc28bQ8CEG5 Gm37608-201ENSMUST00000195696 1880 ntBASIC10.66□□□□□ -0.7
Retrieved 100 of 76,532 protein–RNA pairs in 65.2 ms