Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Lrrc23-202ENSMUST00000112475 1444 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Cux1P53564 Abi1-209ENSMUST00000140164 3403 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Cux1P53564 C030014I23Rik-204ENSMUST00000217463 1370 ntTSL 5 BASIC16.39■□□□□ 0.21
Cux1P53564 AU019823-205ENSMUST00000171462 3339 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
Cux1P53564 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Cux1P53564 Gm15599-201ENSMUST00000122283 1345 ntBASIC16.39■□□□□ 0.21
Cux1P53564 Lmnb2-201ENSMUST00000057623 3531 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Cux1P53564 Gtf2ird1-206ENSMUST00000111244 3461 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Cux1P53564 Mrps33-202ENSMUST00000114797 500 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Cux1P53564 Gm13303-201ENSMUST00000117125 1284 ntBASIC16.39■□□□□ 0.21
Cux1P53564 Gm13554-201ENSMUST00000137349 477 ntTSL 5 BASIC16.39■□□□□ 0.21
Cux1P53564 Gm13778-202ENSMUST00000146633 537 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Cux1P53564 Gm20483-201ENSMUST00000173162 851 ntTSL 2 BASIC16.39■□□□□ 0.21
Cux1P53564 Gm7251-201ENSMUST00000182661 1009 ntBASIC16.39■□□□□ 0.21
Cux1P53564 Ly6c1-206ENSMUST00000188845 784 ntAPPRIS ALT2 TSL 3 BASIC16.39■□□□□ 0.21
Cux1P53564 Abracl-203ENSMUST00000218994 425 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
Cux1P53564 Gm5189-201ENSMUST00000221796 261 ntBASIC16.39■□□□□ 0.21
Cux1P53564 Eif3m-201ENSMUST00000028592 1283 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Cux1P53564 4933407I05Rik-204ENSMUST00000217562 1561 ntBASIC16.39■□□□□ 0.21
Cux1P53564 Traf7-202ENSMUST00000088464 2504 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Cux1P53564 Jak3-202ENSMUST00000110012 3774 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Cux1P53564 Gad2-201ENSMUST00000028123 5744 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Cux1P53564 Gm45675-201ENSMUST00000211202 3429 ntBASIC16.38■□□□□ 0.21
Cux1P53564 1700017B05Rik-202ENSMUST00000213199 3722 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
Cux1P53564 Sox8-201ENSMUST00000025003 3000 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Cux1P53564 Casp14-201ENSMUST00000005488 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Cux1P53564 Gm13781-201ENSMUST00000124153 492 ntTSL 2 BASIC16.38■□□□□ 0.21
Cux1P53564 Gm16537-201ENSMUST00000161529 702 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Cux1P53564 Fam240a-201ENSMUST00000177678 499 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
Cux1P53564 Gm5627-201ENSMUST00000178539 931 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Cux1P53564 Gm32772-203ENSMUST00000207022 675 ntTSL 3 BASIC16.38■□□□□ 0.21
Cux1P53564 Iqcf5-201ENSMUST00000085113 551 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Cux1P53564 Dip2a-201ENSMUST00000036033 6322 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.21
Cux1P53564 Atxn2l-203ENSMUST00000167759 4023 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Cux1P53564 Zfp467-204ENSMUST00000114559 3163 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Cux1P53564 Pex11g-201ENSMUST00000004686 2870 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Cux1P53564 Gba-201ENSMUST00000077367 1779 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Cux1P53564 Coro6-204ENSMUST00000102493 2804 ntAPPRIS ALT1 TSL 5 BASIC16.38■□□□□ 0.21
Cux1P53564 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Cux1P53564 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Cux1P53564 Smarca4-204ENSMUST00000174008 5405 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Cux1P53564 Pck2-205ENSMUST00000226352 2784 ntBASIC16.38■□□□□ 0.21
Cux1P53564 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Cux1P53564 Agpat3-211ENSMUST00000166360 3439 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Cux1P53564 E2f8-201ENSMUST00000058745 3691 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Cux1P53564 Gm17230-201ENSMUST00000171194 3942 ntBASIC16.37■□□□□ 0.21
Cux1P53564 Kcne2-202ENSMUST00000113971 1632 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Cux1P53564 Gm38227-201ENSMUST00000193036 1602 ntBASIC16.37■□□□□ 0.21
Cux1P53564 Zfp853-203ENSMUST00000212715 3133 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
Cux1P53564 Sh3d21-201ENSMUST00000094760 1859 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Cux1P53564 Arhgef40-202ENSMUST00000100639 4843 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Cux1P53564 Ralgapb-201ENSMUST00000046274 8366 ntAPPRIS ALT1 TSL 5 BASIC16.37■□□□□ 0.21
Cux1P53564 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC16.37■□□□□ 0.21
Cux1P53564 Rspry1-201ENSMUST00000060389 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Cux1P53564 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Cux1P53564 Ttc39a-202ENSMUST00000106618 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Cux1P53564 Nr1h4-201ENSMUST00000058126 1964 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
Cux1P53564 2810403D21Rik-204ENSMUST00000144421 747 ntTSL 3 BASIC16.37■□□□□ 0.21
Cux1P53564 Gm25694-201ENSMUST00000175448 282 ntBASIC16.37■□□□□ 0.21
Cux1P53564 Gm26978-201ENSMUST00000182843 304 ntTSL 3 BASIC16.37■□□□□ 0.21
Cux1P53564 Zfp572-201ENSMUST00000183674 1098 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Cux1P53564 Gm37232-201ENSMUST00000194887 367 ntBASIC16.37■□□□□ 0.21
Cux1P53564 4933407I05Rik-202ENSMUST00000213467 420 ntTSL 2 BASIC16.37■□□□□ 0.21
Cux1P53564 AC140409.3-201ENSMUST00000215601 358 ntTSL 3 BASIC16.37■□□□□ 0.21
Cux1P53564 Olfr578-201ENSMUST00000056235 942 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Cux1P53564 Gm17541-201ENSMUST00000080062 525 ntBASIC16.37■□□□□ 0.21
Cux1P53564 Xpnpep1-211ENSMUST00000183274 2120 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Cux1P53564 Gm45187-201ENSMUST00000207697 2760 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Cux1P53564 Gm44907-201ENSMUST00000207423 1633 ntBASIC16.37■□□□□ 0.21
Cux1P53564 Entpd8-201ENSMUST00000044078 2299 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Cux1P53564 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Cux1P53564 Shtn1-202ENSMUST00000163821 3767 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Cux1P53564 Tmem92-201ENSMUST00000100554 2043 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Cux1P53564 Rtn4-203ENSMUST00000102841 4060 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Cux1P53564 Chp1-202ENSMUST00000119172 3027 ntTSL 2 BASIC16.37■□□□□ 0.21
Cux1P53564 Adarb1-201ENSMUST00000020496 6549 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Cux1P53564 Nbdy-204ENSMUST00000185492 1346 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Cux1P53564 Slc37a1-202ENSMUST00000171233 2929 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Cux1P53564 Ralbp1-202ENSMUST00000166543 4089 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Cux1P53564 Tgfb2-206ENSMUST00000195201 3485 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Cux1P53564 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Cux1P53564 Gm26872-201ENSMUST00000180862 2261 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Cux1P53564 Gm44115-201ENSMUST00000203917 2069 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Cux1P53564 Gm5046-201ENSMUST00000100608 611 ntBASIC16.36■□□□□ 0.21
Cux1P53564 Gm13197-201ENSMUST00000117204 225 ntBASIC16.36■□□□□ 0.21
Cux1P53564 Gm12737-201ENSMUST00000142835 725 ntTSL 5 BASIC16.36■□□□□ 0.21
Cux1P53564 Gm8464-202ENSMUST00000146697 1142 ntBASIC16.36■□□□□ 0.21
Cux1P53564 Gm4750-201ENSMUST00000151942 1142 ntBASIC16.36■□□□□ 0.21
Cux1P53564 Gm27200-201ENSMUST00000184626 657 ntTSL 3 BASIC16.36■□□□□ 0.21
Cux1P53564 Omt2b-203ENSMUST00000187667 727 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Cux1P53564 Gm6069-201ENSMUST00000196501 463 ntBASIC16.36■□□□□ 0.21
Cux1P53564 Gm42780-201ENSMUST00000197083 734 ntBASIC16.36■□□□□ 0.21
Cux1P53564 Gm7812-201ENSMUST00000203479 874 ntBASIC16.36■□□□□ 0.21
Cux1P53564 Gm18596-201ENSMUST00000218133 843 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
Cux1P53564 Szrd1-203ENSMUST00000102487 3244 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Cux1P53564 Tex2-202ENSMUST00000103070 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Cux1P53564 Nckap5-212ENSMUST00000162877 2630 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Cux1P53564 Wwp2-201ENSMUST00000166615 4314 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Cux1P53564 Mkrn1-204ENSMUST00000114823 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Cux1P53564 Gm31108-201ENSMUST00000204101 1633 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 39.9 ms