Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Fetub-204ENSMUST00000170805 1508 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Smc1aQ9CU62 Megf11-202ENSMUST00000093829 3652 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Smc1aQ9CU62 Slc7a3-203ENSMUST00000113710 2750 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Smc1aQ9CU62 Sptbn5-204ENSMUST00000156159 3625 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Smc1aQ9CU62 Srd5a3-202ENSMUST00000113506 1241 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Smc1aQ9CU62 Utp23-202ENSMUST00000136129 779 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Smc1aQ9CU62 Gm13869-201ENSMUST00000146978 1054 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Smc1aQ9CU62 1700007P06Rik-201ENSMUST00000160380 823 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Smc1aQ9CU62 Pdcd5-ps-201ENSMUST00000191699 381 ntBASIC12.18□□□□□ -0.46
Smc1aQ9CU62 Fos-201ENSMUST00000021674 2108 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Smc1aQ9CU62 CT573047.1-201ENSMUST00000223652 851 ntBASIC12.18□□□□□ -0.46
Smc1aQ9CU62 Nmi-201ENSMUST00000028314 1291 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Smc1aQ9CU62 Apoc4-201ENSMUST00000003071 538 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Smc1aQ9CU62 BC048507-201ENSMUST00000078471 600 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Smc1aQ9CU62 Olfr1163-201ENSMUST00000099835 1043 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Smc1aQ9CU62 Zfp612-201ENSMUST00000058804 3180 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Smc1aQ9CU62 Ezr-201ENSMUST00000064234 3164 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Smc1aQ9CU62 Rnf2-201ENSMUST00000076110 3160 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Smc1aQ9CU62 Esr2-202ENSMUST00000101291 3362 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Smc1aQ9CU62 Ankrd46-201ENSMUST00000057486 2509 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Smc1aQ9CU62 4930512J16Rik-201ENSMUST00000203704 1859 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Smc1aQ9CU62 Slfn1-201ENSMUST00000037994 1864 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Smc1aQ9CU62 Pde6c-202ENSMUST00000112329 2895 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Smc1aQ9CU62 Abcb8-203ENSMUST00000115077 3074 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Smc1aQ9CU62 Acnat1-202ENSMUST00000107697 1446 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Smc1aQ9CU62 Chrne-201ENSMUST00000014753 1616 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Smc1aQ9CU62 Nrg1-212ENSMUST00000208598 1778 ntTSL 5 BASIC12.18□□□□□ -0.46
Smc1aQ9CU62 Tor1aip2-201ENSMUST00000060404 5135 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Smc1aQ9CU62 Rxrg-201ENSMUST00000015987 2110 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Smc1aQ9CU62 Gm13684-201ENSMUST00000152569 2264 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Smc1aQ9CU62 Lrrc8b-201ENSMUST00000112707 6726 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Smc1aQ9CU62 Tyro3-202ENSMUST00000110783 4460 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Smc1aQ9CU62 Aldoart2-201ENSMUST00000080123 1658 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Smc1aQ9CU62 Angptl2-201ENSMUST00000004208 3339 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Smc1aQ9CU62 4933406C10Rik-201ENSMUST00000180391 1451 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Smc1aQ9CU62 Ints10-201ENSMUST00000034328 4201 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Smc1aQ9CU62 Sez6l-205ENSMUST00000212480 5857 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Smc1aQ9CU62 0610010K14Rik-206ENSMUST00000108576 576 ntAPPRIS ALT1 TSL 2 BASIC12.17□□□□□ -0.46
Smc1aQ9CU62 Uqcc1-202ENSMUST00000109631 1091 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Smc1aQ9CU62 Gm14275-201ENSMUST00000152112 430 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Smc1aQ9CU62 1600010M07Rik-202ENSMUST00000188662 654 ntTSL 2 BASIC12.17□□□□□ -0.46
Smc1aQ9CU62 Gng8-202ENSMUST00000205459 522 ntAPPRIS P1 TSL 3 BASIC12.17□□□□□ -0.46
Smc1aQ9CU62 Gm7959-201ENSMUST00000221823 1078 ntBASIC12.17□□□□□ -0.46
Smc1aQ9CU62 Gm18856-203ENSMUST00000222015 483 ntTSL 2 BASIC12.17□□□□□ -0.46
Smc1aQ9CU62 AC122346.3-201ENSMUST00000223983 306 ntBASIC12.17□□□□□ -0.46
Smc1aQ9CU62 Mitd1-201ENSMUST00000027257 1231 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Smc1aQ9CU62 Tmem220-202ENSMUST00000079077 1147 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Smc1aQ9CU62 Gm10263-201ENSMUST00000085163 300 ntBASIC12.17□□□□□ -0.46
Smc1aQ9CU62 Olfr1339-201ENSMUST00000094832 948 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Smc1aQ9CU62 Myo9a-205ENSMUST00000135298 12198 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Smc1aQ9CU62 Prr5l-210ENSMUST00000171088 4296 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Smc1aQ9CU62 Gm18642-201ENSMUST00000206642 1400 ntBASIC12.17□□□□□ -0.46
Smc1aQ9CU62 Alg12-204ENSMUST00000162183 2130 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Smc1aQ9CU62 Olfr315-202ENSMUST00000203256 2458 ntAPPRIS P1 TSL 3 BASIC12.17□□□□□ -0.46
Smc1aQ9CU62 Tcn2-206ENSMUST00000109992 1945 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Smc1aQ9CU62 Faim2-201ENSMUST00000023750 4520 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Smc1aQ9CU62 Dhx40-201ENSMUST00000018569 3813 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Smc1aQ9CU62 Gm11131-201ENSMUST00000113886 3122 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Smc1aQ9CU62 Mthfr-201ENSMUST00000069604 6072 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Smc1aQ9CU62 Pcdha6-201ENSMUST00000193389 4653 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Smc1aQ9CU62 Fam13c-201ENSMUST00000062883 3262 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Smc1aQ9CU62 Scrn1-201ENSMUST00000019268 4810 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Smc1aQ9CU62 Platr4-203ENSMUST00000199155 2161 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Smc1aQ9CU62 Sox13-203ENSMUST00000144386 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Smc1aQ9CU62 Nxpe5-201ENSMUST00000110929 2312 ntAPPRIS P2 TSL 5 BASIC12.16□□□□□ -0.46
Smc1aQ9CU62 AC122273.1-201ENSMUST00000213634 2327 ntBASIC12.16□□□□□ -0.46
Smc1aQ9CU62 Disp1-201ENSMUST00000003035 4984 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Smc1aQ9CU62 Cd55b-201ENSMUST00000112488 1325 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Smc1aQ9CU62 Osr2-204ENSMUST00000228152 1324 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
Smc1aQ9CU62 Apc-203ENSMUST00000115781 12346 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Smc1aQ9CU62 Gm15997-201ENSMUST00000202188 1491 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Smc1aQ9CU62 Adgrv1-214ENSMUST00000224088 1492 ntBASIC12.16□□□□□ -0.46
Smc1aQ9CU62 Dck-201ENSMUST00000031311 3078 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Smc1aQ9CU62 Smg6-201ENSMUST00000045281 5848 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Smc1aQ9CU62 Arhgef10-202ENSMUST00000110800 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Smc1aQ9CU62 Olfr707-204ENSMUST00000213251 1777 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Smc1aQ9CU62 Ank3-220ENSMUST00000182439 2586 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Smc1aQ9CU62 Tmem184a-202ENSMUST00000110832 4326 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Smc1aQ9CU62 Trav13d-1-201ENSMUST00000103588 396 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
Smc1aQ9CU62 Tomm5-201ENSMUST00000107807 442 ntTSL 2 BASIC12.16□□□□□ -0.46
Smc1aQ9CU62 Gm13351-201ENSMUST00000118087 414 ntBASIC12.16□□□□□ -0.46
Smc1aQ9CU62 Gm13549-201ENSMUST00000118339 796 ntBASIC12.16□□□□□ -0.46
Smc1aQ9CU62 BB557941-201ENSMUST00000126549 1097 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Smc1aQ9CU62 2810403D21Rik-208ENSMUST00000153212 1005 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Smc1aQ9CU62 Gm22379-201ENSMUST00000157480 131 ntBASIC12.16□□□□□ -0.46
Smc1aQ9CU62 Gm4862-201ENSMUST00000170405 438 ntBASIC12.16□□□□□ -0.46
Smc1aQ9CU62 Iqcf3-202ENSMUST00000186668 633 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Smc1aQ9CU62 Gm29083-201ENSMUST00000189205 733 ntTSL 3 BASIC12.16□□□□□ -0.46
Smc1aQ9CU62 5730585A16Rik-201ENSMUST00000193457 1027 ntBASIC12.16□□□□□ -0.46
Smc1aQ9CU62 Gm18463-201ENSMUST00000207258 474 ntBASIC12.16□□□□□ -0.46
Smc1aQ9CU62 Gm15802-202ENSMUST00000209595 1094 ntTSL 5 BASIC12.16□□□□□ -0.46
Smc1aQ9CU62 Gm18514-201ENSMUST00000218980 436 ntBASIC12.16□□□□□ -0.46
Smc1aQ9CU62 Gm46204-201ENSMUST00000219800 411 ntTSL 3 BASIC12.16□□□□□ -0.46
Smc1aQ9CU62 CT009527.1-201ENSMUST00000224205 339 ntBASIC12.16□□□□□ -0.46
Smc1aQ9CU62 AC154572.1-201ENSMUST00000226098 1204 ntBASIC12.16□□□□□ -0.46
Smc1aQ9CU62 Hsdl1-204ENSMUST00000212517 2215 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Smc1aQ9CU62 Zfp629-203ENSMUST00000122066 5850 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Smc1aQ9CU62 Gpr146-203ENSMUST00000100514 4264 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Smc1aQ9CU62 Nrxn1-215ENSMUST00000173917 1439 ntTSL 2 BASIC12.16□□□□□ -0.46
Smc1aQ9CU62 Notch2-201ENSMUST00000079812 10500 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 37.7 ms