Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Utp23-202ENSMUST00000136129 779 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Upf3bQ3ULL6 Gm28038-201ENSMUST00000143119 378 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
Upf3bQ3ULL6 4930538E20Rik-202ENSMUST00000146717 497 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Upf3bQ3ULL6 Rwdd2a-202ENSMUST00000179212 1130 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Upf3bQ3ULL6 Gm9135-201ENSMUST00000182963 990 ntBASIC11.61□□□□□ -0.55
Upf3bQ3ULL6 Gm7985-201ENSMUST00000183329 981 ntBASIC11.61□□□□□ -0.55
Upf3bQ3ULL6 Gm27438-201ENSMUST00000183480 110 ntBASIC11.61□□□□□ -0.55
Upf3bQ3ULL6 Gm28836-201ENSMUST00000185842 633 ntTSL 2 BASIC11.61□□□□□ -0.55
Upf3bQ3ULL6 Gm38139-201ENSMUST00000195806 704 ntTSL 2 BASIC11.61□□□□□ -0.55
Upf3bQ3ULL6 Gm42423-201ENSMUST00000196396 670 ntTSL 3 BASIC11.61□□□□□ -0.55
Upf3bQ3ULL6 AA545190-201ENSMUST00000203495 1053 ntTSL 2 BASIC11.61□□□□□ -0.55
Upf3bQ3ULL6 Gm7600-201ENSMUST00000209657 785 ntBASIC11.61□□□□□ -0.55
Upf3bQ3ULL6 Olfr567-ps1-201ENSMUST00000210349 857 ntBASIC11.61□□□□□ -0.55
Upf3bQ3ULL6 Akr1c18-201ENSMUST00000021635 1200 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
Upf3bQ3ULL6 Gm3619-201ENSMUST00000219947 775 ntBASIC11.61□□□□□ -0.55
Upf3bQ3ULL6 AC132901.1-201ENSMUST00000224345 508 ntBASIC11.61□□□□□ -0.55
Upf3bQ3ULL6 CT025679.1-201ENSMUST00000227106 449 ntBASIC11.61□□□□□ -0.55
Upf3bQ3ULL6 AC131586.1-201ENSMUST00000228844 2964 ntBASIC11.61□□□□□ -0.55
Upf3bQ3ULL6 1700001K19Rik-201ENSMUST00000070659 955 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Upf3bQ3ULL6 Gm16380-201ENSMUST00000077997 478 ntBASIC11.61□□□□□ -0.55
Upf3bQ3ULL6 D630003M21Rik-201ENSMUST00000046944 3910 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
Upf3bQ3ULL6 Dnmt3aos-201ENSMUST00000144896 1385 ntTSL 2 BASIC11.61□□□□□ -0.55
Upf3bQ3ULL6 Kbtbd12-206ENSMUST00000184878 3351 ntTSL 5 BASIC11.61□□□□□ -0.55
Upf3bQ3ULL6 Cdc20b-204ENSMUST00000181568 1494 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
Upf3bQ3ULL6 Gm8378-202ENSMUST00000167777 2624 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Upf3bQ3ULL6 Gm10436-202ENSMUST00000220521 1788 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Upf3bQ3ULL6 Mefv-202ENSMUST00000100222 3249 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Upf3bQ3ULL6 Slc25a44-202ENSMUST00000168755 3418 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Upf3bQ3ULL6 Arih2-201ENSMUST00000013338 3924 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Upf3bQ3ULL6 2610005L07Rik-202ENSMUST00000140111 4009 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Upf3bQ3ULL6 Pde2a-201ENSMUST00000163751 4218 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Upf3bQ3ULL6 Rcbtb2-223ENSMUST00000170677 3573 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Upf3bQ3ULL6 Rab30-202ENSMUST00000107179 1304 ntTSL 5 BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Slc13a5-202ENSMUST00000137701 1746 ntTSL 5 BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Cap1-201ENSMUST00000069533 2620 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Lpo-201ENSMUST00000103177 2926 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Chdh-202ENSMUST00000118917 3406 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Grik4-201ENSMUST00000034515 3413 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Sptbn5-204ENSMUST00000156159 3625 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Elfn1-201ENSMUST00000050519 3832 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Dlgap1-214ENSMUST00000155016 4712 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Chic1-201ENSMUST00000116547 7375 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Gm29895-201ENSMUST00000209933 5652 ntTSL 5 BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Nr4a2-201ENSMUST00000028166 3568 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Pla2g4c-201ENSMUST00000043612 3382 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Gdf2-201ENSMUST00000100720 2988 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Lsamp-201ENSMUST00000078873 2951 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Gm26672-201ENSMUST00000180922 2685 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Sh3d21-201ENSMUST00000094760 1859 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Acot9-201ENSMUST00000026324 1752 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Ccndbp1-202ENSMUST00000099488 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Tnk2-204ENSMUST00000115123 4225 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Nup210-202ENSMUST00000113509 6893 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Arpc3-202ENSMUST00000102525 899 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Pemt-202ENSMUST00000102692 1003 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Pmp22-202ENSMUST00000108700 733 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Serf2-202ENSMUST00000110615 876 ntTSL 2 BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Gm12179-201ENSMUST00000118344 1272 ntBASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Gm11422-201ENSMUST00000118925 1103 ntBASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 B230307C23Rik-202ENSMUST00000122450 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Gm8705-201ENSMUST00000180823 812 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Gm26918-201ENSMUST00000182496 728 ntTSL 2 BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Gm26976-201ENSMUST00000182929 908 ntBASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Rbp2-202ENSMUST00000187905 611 ntAPPRIS P1 TSL 3 BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 4930402C01Rik-201ENSMUST00000192586 663 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 4930447C11Rik-201ENSMUST00000204503 928 ntBASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Gm2594-201ENSMUST00000214774 742 ntBASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Gm10752-201ENSMUST00000218348 729 ntBASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Gm18968-201ENSMUST00000221319 862 ntBASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Pgap2-201ENSMUST00000033292 1201 ntAPPRIS ALT1 TSL 5 BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Tsga8-201ENSMUST00000049420 1070 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Snu13-202ENSMUST00000080622 1283 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Acyp1-201ENSMUST00000008966 648 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Atp1a3-205ENSMUST00000196684 3642 ntTSL 5 BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Mkx-201ENSMUST00000079788 3202 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Gm38115-201ENSMUST00000194317 2413 ntTSL 5 BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Gm10699-201ENSMUST00000098916 2130 ntBASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Kir3dl2-202ENSMUST00000113108 1932 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Zfp872-202ENSMUST00000178901 2958 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Flcn-203ENSMUST00000102697 3437 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Nr1i3-201ENSMUST00000005820 1414 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Ndufaf1-203ENSMUST00000110802 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Upf3bQ3ULL6 Rpap2-204ENSMUST00000112654 2914 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Armc1-201ENSMUST00000029125 3673 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Colq-201ENSMUST00000112027 2837 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Zfp110-201ENSMUST00000004614 3591 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Tmod2-202ENSMUST00000098552 9871 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Fam234b-201ENSMUST00000111915 4221 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Hnrnpc-210ENSMUST00000228232 2535 ntAPPRIS P5 BASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Phactr1-213ENSMUST00000148891 5307 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Zmynd11-203ENSMUST00000110634 3824 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Phf24-203ENSMUST00000107976 6538 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Gfm2-202ENSMUST00000042084 3074 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Bpifb1-202ENSMUST00000081816 1699 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Zfp354a-204ENSMUST00000109122 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Mdh1-201ENSMUST00000102874 2122 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Vwa5b2-202ENSMUST00000096197 4527 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Abca2-201ENSMUST00000102919 8033 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 9130227L01Rik-202ENSMUST00000189293 1906 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Asb6-201ENSMUST00000041726 4147 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 53.5 ms