Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Phf5a-201ENSMUST00000023117 864 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Col1a1P11087 1700016D06Rik-201ENSMUST00000033906 1263 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Col1a1P11087 Cand1-201ENSMUST00000020315 7766 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col1a1P11087 Neu2-206ENSMUST00000166259 1596 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col1a1P11087 Samd11-201ENSMUST00000179919 2610 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col1a1P11087 Unk-201ENSMUST00000021116 3735 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col1a1P11087 Mbtps2-203ENSMUST00000112522 3891 ntTSL 2 BASIC12.57□□□□□ -0.4
Col1a1P11087 Mbtps2-208ENSMUST00000179062 3890 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
Col1a1P11087 Dmp1-201ENSMUST00000066708 2764 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col1a1P11087 Rfesd-201ENSMUST00000050997 2807 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col1a1P11087 Deup1-203ENSMUST00000115593 3019 ntTSL 5 BASIC12.57□□□□□ -0.4
Col1a1P11087 Cdc42ep4-201ENSMUST00000053536 3008 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col1a1P11087 Mak16-201ENSMUST00000033983 1902 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col1a1P11087 Ptprh-202ENSMUST00000166650 3642 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Col1a1P11087 Slc12a8-203ENSMUST00000119173 2382 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Col1a1P11087 Ptprr-206ENSMUST00000148731 2511 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Col1a1P11087 Rprd1b-203ENSMUST00000109518 4399 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Col1a1P11087 Myo18a-211ENSMUST00000130627 6202 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Col1a1P11087 Pidd1-202ENSMUST00000106005 2900 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col1a1P11087 Olfr648-202ENSMUST00000216612 2929 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
Col1a1P11087 Egr2-201ENSMUST00000048289 2965 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col1a1P11087 Rab11fip3-203ENSMUST00000122103 5015 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col1a1P11087 Haus6-201ENSMUST00000070607 6158 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col1a1P11087 Gm5046-201ENSMUST00000100608 611 ntBASIC12.57□□□□□ -0.4
Col1a1P11087 Tnnt3-203ENSMUST00000105941 747 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col1a1P11087 Tnnt3-204ENSMUST00000105942 720 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col1a1P11087 Tnnt3-205ENSMUST00000105943 720 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col1a1P11087 Tnnt3-207ENSMUST00000105945 747 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col1a1P11087 Tnnt3-208ENSMUST00000105946 765 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col1a1P11087 Gstm6-204ENSMUST00000106684 1179 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Col1a1P11087 Fam220-ps-201ENSMUST00000116535 783 ntBASIC12.57□□□□□ -0.4
Col1a1P11087 Gm14370-201ENSMUST00000122460 868 ntBASIC12.57□□□□□ -0.4
Col1a1P11087 Spata3-205ENSMUST00000130504 1100 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col1a1P11087 Maats1os-201ENSMUST00000133496 326 ntTSL 3 BASIC12.57□□□□□ -0.4
Col1a1P11087 Gm15273-201ENSMUST00000142302 868 ntBASIC12.57□□□□□ -0.4
Col1a1P11087 Gm7023-201ENSMUST00000147295 868 ntBASIC12.57□□□□□ -0.4
Col1a1P11087 Gm23479-201ENSMUST00000158876 122 ntBASIC12.57□□□□□ -0.4
Col1a1P11087 Fam47e-205ENSMUST00000175974 1016 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Col1a1P11087 Gm26379-201ENSMUST00000178125 138 ntBASIC12.57□□□□□ -0.4
Col1a1P11087 Gm14357-201ENSMUST00000178352 868 ntBASIC12.57□□□□□ -0.4
Col1a1P11087 Gm14361-201ENSMUST00000178547 868 ntBASIC12.57□□□□□ -0.4
Col1a1P11087 Gm14348-201ENSMUST00000179183 868 ntBASIC12.57□□□□□ -0.4
Col1a1P11087 Gm21963-201ENSMUST00000179519 330 ntBASIC12.57□□□□□ -0.4
Col1a1P11087 Mir6934-201ENSMUST00000183965 62 ntBASIC12.57□□□□□ -0.4
Col1a1P11087 Gm28809-201ENSMUST00000187542 782 ntTSL 5 BASIC12.57□□□□□ -0.4
Col1a1P11087 Mpzl1-203ENSMUST00000191818 853 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Col1a1P11087 Gm8625-201ENSMUST00000194185 1077 ntBASIC12.57□□□□□ -0.4
Col1a1P11087 Gm5845-201ENSMUST00000195812 796 ntBASIC12.57□□□□□ -0.4
Col1a1P11087 Gm44460-201ENSMUST00000196179 129 ntBASIC12.57□□□□□ -0.4
Col1a1P11087 Pcbd1-202ENSMUST00000218005 361 ntTSL 3 BASIC12.57□□□□□ -0.4
Col1a1P11087 Gm18749-201ENSMUST00000222410 692 ntBASIC12.57□□□□□ -0.4
Col1a1P11087 AC127583.1-201ENSMUST00000224351 540 ntBASIC12.57□□□□□ -0.4
Col1a1P11087 AC124581.2-201ENSMUST00000225459 282 ntBASIC12.57□□□□□ -0.4
Col1a1P11087 Scgb3a1-201ENSMUST00000043873 493 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col1a1P11087 Scgb3a1-202ENSMUST00000076006 598 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col1a1P11087 Gm14538-201ENSMUST00000122019 1327 ntBASIC12.57□□□□□ -0.4
Col1a1P11087 Gm37582-201ENSMUST00000192953 1409 ntBASIC12.57□□□□□ -0.4
Col1a1P11087 Gm45110-201ENSMUST00000205704 1402 ntBASIC12.57□□□□□ -0.4
Col1a1P11087 Gm19299-202ENSMUST00000215724 1435 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Col1a1P11087 Gm45076-201ENSMUST00000207517 1517 ntTSL 5 BASIC12.57□□□□□ -0.4
Col1a1P11087 Epha5-202ENSMUST00000113398 4830 ntTSL 5 BASIC12.57□□□□□ -0.4
Col1a1P11087 Morf4l2-215ENSMUST00000169418 1782 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
Col1a1P11087 Hhipl2-202ENSMUST00000192527 2310 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Col1a1P11087 Sh3gl2-201ENSMUST00000030212 2822 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col1a1P11087 Tyw1-201ENSMUST00000040213 3044 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col1a1P11087 Epb41l2-207ENSMUST00000218903 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col1a1P11087 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col1a1P11087 Sash3-201ENSMUST00000033427 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col1a1P11087 Gm12829-201ENSMUST00000146346 2434 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Col1a1P11087 Hnrnph2-202ENSMUST00000059297 2364 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col1a1P11087 Mtdh-201ENSMUST00000022865 6919 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col1a1P11087 Gcsam-202ENSMUST00000161347 1796 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col1a1P11087 Cd14-201ENSMUST00000061829 1572 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col1a1P11087 Wbp1l-204ENSMUST00000138302 3900 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col1a1P11087 Gm23129-201ENSMUST00000104259 132 ntBASIC12.56□□□□□ -0.4
Col1a1P11087 Gm24981-201ENSMUST00000104459 132 ntBASIC12.56□□□□□ -0.4
Col1a1P11087 Gm15702-201ENSMUST00000119680 444 ntBASIC12.56□□□□□ -0.4
Col1a1P11087 Gm13778-202ENSMUST00000146633 537 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Col1a1P11087 Gm20483-201ENSMUST00000173162 851 ntTSL 2 BASIC12.56□□□□□ -0.4
Col1a1P11087 Gm24368-201ENSMUST00000175388 106 ntBASIC12.56□□□□□ -0.4
Col1a1P11087 Gm3052-201ENSMUST00000186409 829 ntBASIC12.56□□□□□ -0.4
Col1a1P11087 Gm38004-201ENSMUST00000192972 357 ntBASIC12.56□□□□□ -0.4
Col1a1P11087 Gm18539-201ENSMUST00000204745 1090 ntBASIC12.56□□□□□ -0.4
Col1a1P11087 Gm46328-201ENSMUST00000217924 976 ntTSL 5 BASIC12.56□□□□□ -0.4
Col1a1P11087 Gm36172-201ENSMUST00000219852 723 ntTSL 3 BASIC12.56□□□□□ -0.4
Col1a1P11087 Olfr1384-201ENSMUST00000060434 1034 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Col1a1P11087 Arhgef9-206ENSMUST00000113884 3784 ntTSL 5 BASIC12.56□□□□□ -0.4
Col1a1P11087 Cisd2-201ENSMUST00000029815 3361 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col1a1P11087 Ly75-201ENSMUST00000028362 5172 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col1a1P11087 Ncf1-202ENSMUST00000111275 2721 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col1a1P11087 Edc3-201ENSMUST00000043990 5708 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col1a1P11087 Mtus1-202ENSMUST00000059115 6548 ntTSL 5 BASIC12.56□□□□□ -0.4
Col1a1P11087 Olfr1495-202ENSMUST00000215930 2025 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Col1a1P11087 Cbx7-201ENSMUST00000089293 3388 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col1a1P11087 Ncapd2-201ENSMUST00000043848 4629 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col1a1P11087 Lpin3-204ENSMUST00000109457 3215 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col1a1P11087 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col1a1P11087 Olfr707-204ENSMUST00000213251 1777 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Col1a1P11087 Spata33-208ENSMUST00000212892 2940 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Col1a1P11087 Pck2-205ENSMUST00000226352 2784 ntBASIC12.55□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 49.5 ms