Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm11824-201ENSMUST00000120191 846 ntBASIC12.7□□□□□ -0.38
Scn11aQ9R053 Gm9097-201ENSMUST00000120514 880 ntBASIC12.7□□□□□ -0.38
Scn11aQ9R053 Rbm48-202ENSMUST00000121877 617 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Scn11aQ9R053 Defa-ps16-201ENSMUST00000121939 171 ntBASIC12.7□□□□□ -0.38
Scn11aQ9R053 Zfp419-201ENSMUST00000173446 916 ntBASIC12.7□□□□□ -0.38
Scn11aQ9R053 Mir3091-201ENSMUST00000175086 76 ntBASIC12.7□□□□□ -0.38
Scn11aQ9R053 Gm7672-201ENSMUST00000180915 872 ntBASIC12.7□□□□□ -0.38
Scn11aQ9R053 Gm8828-201ENSMUST00000196786 1290 ntBASIC12.7□□□□□ -0.38
Scn11aQ9R053 Gm42849-201ENSMUST00000202834 1584 ntTSL 5 BASIC12.7□□□□□ -0.38
Scn11aQ9R053 Smim23-201ENSMUST00000020508 620 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Scn11aQ9R053 Bckdk-207ENSMUST00000206745 1702 ntTSL 5 BASIC12.7□□□□□ -0.38
Scn11aQ9R053 Gm7319-201ENSMUST00000210047 778 ntBASIC12.7□□□□□ -0.38
Scn11aQ9R053 Rffl-201ENSMUST00000021036 1719 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Scn11aQ9R053 Tcl1b1-202ENSMUST00000222342 664 ntAPPRIS ALT2 TSL 2 BASIC12.7□□□□□ -0.38
Scn11aQ9R053 Sun5-201ENSMUST00000028982 1157 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Scn11aQ9R053 Adgb-201ENSMUST00000045328 1893 ntTSL 2 BASIC12.7□□□□□ -0.38
Scn11aQ9R053 Gnas-201ENSMUST00000080493 3519 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Scn11aQ9R053 Flad1-202ENSMUST00000107426 2238 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Scn11aQ9R053 Cacnb2-203ENSMUST00000114723 3945 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Scn11aQ9R053 Tcp10a-203ENSMUST00000129709 1778 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Scn11aQ9R053 Zfp42-201ENSMUST00000082120 1772 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Scn11aQ9R053 Optc-205ENSMUST00000153617 1615 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Scn11aQ9R053 Dync2li1-201ENSMUST00000025101 1324 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Scn11aQ9R053 Baz1b-201ENSMUST00000002825 6492 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Scn11aQ9R053 Atcayos-203ENSMUST00000150782 3057 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Scn11aQ9R053 Rasgrp4-211ENSMUST00000203380 3077 ntTSL 5 BASIC12.7□□□□□ -0.38
Scn11aQ9R053 Gm6727-201ENSMUST00000204102 1518 ntBASIC12.7□□□□□ -0.38
Scn11aQ9R053 Ptpru-201ENSMUST00000030741 4416 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Scn11aQ9R053 Pex1-201ENSMUST00000006061 4433 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Scn11aQ9R053 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Scn11aQ9R053 Stx11-202ENSMUST00000163425 4032 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Dcun1d2-201ENSMUST00000045366 2748 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Angptl4-201ENSMUST00000002360 3053 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Runx1t1-204ENSMUST00000105566 6090 ntAPPRIS ALT1 TSL 5 BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Mirt1-203ENSMUST00000181539 2259 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Ighv1-49-201ENSMUST00000103519 294 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Snora68-201ENSMUST00000104375 131 ntBASIC12.69□□□□□ -0.38
Scn11aQ9R053 Polr1c-203ENSMUST00000124655 829 ntTSL 5 BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Gm13580-201ENSMUST00000131457 566 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Gm13134-201ENSMUST00000132106 738 ntTSL 3 BASIC12.69□□□□□ -0.38
Scn11aQ9R053 H2afy3-201ENSMUST00000151919 1112 ntBASIC12.69□□□□□ -0.38
Scn11aQ9R053 Gm11655-201ENSMUST00000153899 765 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Gm12847-201ENSMUST00000156219 413 ntTSL 5 BASIC12.69□□□□□ -0.38
Scn11aQ9R053 C430039J16Rik-201ENSMUST00000181148 658 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Gm28499-201ENSMUST00000191576 666 ntTSL 2 BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Gm34248-201ENSMUST00000200027 474 ntBASIC12.69□□□□□ -0.38
Scn11aQ9R053 Gm44304-201ENSMUST00000200509 145 ntBASIC12.69□□□□□ -0.38
Scn11aQ9R053 Rassf6-205ENSMUST00000202704 1178 ntAPPRIS P3 TSL 5 BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Gm44173-201ENSMUST00000204316 132 ntBASIC12.69□□□□□ -0.38
Scn11aQ9R053 1700016D06Rik-201ENSMUST00000033906 1263 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Grid1-201ENSMUST00000043349 5720 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Itgav-202ENSMUST00000111740 6788 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Micalcl-203ENSMUST00000106645 2309 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Kcnt1-212ENSMUST00000197917 3711 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Gm20755-201ENSMUST00000196893 1827 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Olfr582-203ENSMUST00000211036 1849 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Tacc2-201ENSMUST00000033141 3940 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Mrpl24-202ENSMUST00000119968 1339 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Spata5-202ENSMUST00000108112 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Draxin-201ENSMUST00000030862 5200 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Natd1-201ENSMUST00000019075 4179 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Bmp1-201ENSMUST00000022693 3684 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Acox3-203ENSMUST00000114237 2956 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Scn11aQ9R053 AC131081.1-201ENSMUST00000219535 1736 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Dctn1-205ENSMUST00000113919 4292 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Atf3-203ENSMUST00000195117 1906 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Scn11aQ9R053 C030014I23Rik-204ENSMUST00000217463 1370 ntTSL 5 BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Piezo1-209ENSMUST00000156333 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Piezo1-201ENSMUST00000067252 8216 ntAPPRIS P2 TSL 5 BASIC12.69□□□□□ -0.38
Scn11aQ9R053 H2-T3-204ENSMUST00000102675 2312 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Etv3-201ENSMUST00000117293 2151 ntAPPRIS ALT2 TSL 2 BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Mmd2-201ENSMUST00000037048 3317 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Lrrc57-201ENSMUST00000102496 1848 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Cisd2-201ENSMUST00000029815 3361 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Phc1-211ENSMUST00000161054 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Gm8914-201ENSMUST00000101396 1035 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Gm5071-201ENSMUST00000104922 1035 ntBASIC12.69□□□□□ -0.38
Scn11aQ9R053 Scgb1b29-201ENSMUST00000108094 282 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Gm12435-201ENSMUST00000118949 1016 ntBASIC12.69□□□□□ -0.38
Scn11aQ9R053 Gm13031-201ENSMUST00000140501 924 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Gm18182-201ENSMUST00000191380 1251 ntBASIC12.69□□□□□ -0.38
Scn11aQ9R053 Gm5851-201ENSMUST00000194132 1204 ntBASIC12.69□□□□□ -0.38
Scn11aQ9R053 Gm42780-201ENSMUST00000197083 734 ntBASIC12.69□□□□□ -0.38
Scn11aQ9R053 Gm43821-201ENSMUST00000199198 729 ntTSL 3 BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Gm44017-201ENSMUST00000203231 740 ntTSL 5 BASIC12.69□□□□□ -0.38
Scn11aQ9R053 CAAA01125382.3-201ENSMUST00000215277 643 ntBASIC12.69□□□□□ -0.38
Scn11aQ9R053 Gm5072-201ENSMUST00000063726 1035 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Scn11aQ9R053 Nrd1-201ENSMUST00000065977 4311 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Scn11aQ9R053 Smtn-203ENSMUST00000075118 3117 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Scn11aQ9R053 Apc2-202ENSMUST00000105359 9173 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Scn11aQ9R053 Pdzk1-203ENSMUST00000107070 2711 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Scn11aQ9R053 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Scn11aQ9R053 Shtn1-202ENSMUST00000163821 3767 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Scn11aQ9R053 Sdccag8-201ENSMUST00000027785 2776 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Scn11aQ9R053 Zfp41-204ENSMUST00000161785 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Scn11aQ9R053 C130026L21Rik-204ENSMUST00000199587 1838 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Scn11aQ9R053 Ldb3-202ENSMUST00000022328 2468 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Scn11aQ9R053 Tiam1-214ENSMUST00000164263 3569 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 41.1 ms