Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 9230114K14Rik-202ENSMUST00000198720 837 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Cux1P53564 1700018G05Rik-201ENSMUST00000211116 386 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cux1P53564 AC154347.2-201ENSMUST00000221223 715 ntTSL 3 BASIC16.45■□□□□ 0.22
Cux1P53564 Hsf2-204ENSMUST00000220042 2430 ntTSL 5 BASIC16.45■□□□□ 0.22
Cux1P53564 Nsd3-210ENSMUST00000153597 1865 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Cux1P53564 Arhgap24-203ENSMUST00000094559 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cux1P53564 Cd74-203ENSMUST00000167610 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cux1P53564 Gm7823-201ENSMUST00000120761 1623 ntBASIC16.45■□□□□ 0.22
Cux1P53564 Gm38376-201ENSMUST00000195493 2253 ntBASIC16.45■□□□□ 0.22
Cux1P53564 C77080-203ENSMUST00000106051 5049 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cux1P53564 AC154220.1-201ENSMUST00000225033 1705 ntBASIC16.45■□□□□ 0.22
Cux1P53564 Eddm3b-201ENSMUST00000100645 1412 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cux1P53564 Zfpm2-201ENSMUST00000053467 4974 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cux1P53564 Rbm8a-203ENSMUST00000198027 2757 ntTSL 3 BASIC16.45■□□□□ 0.22
Cux1P53564 Eya2-201ENSMUST00000063433 2460 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cux1P53564 Xlr4c-201ENSMUST00000068551 1500 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Cux1P53564 2700068H02Rik-201ENSMUST00000137882 1872 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Cux1P53564 Gm45449-201ENSMUST00000211485 1960 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Cux1P53564 Arhgef2-206ENSMUST00000175779 3065 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Cux1P53564 Dgkz-203ENSMUST00000111303 4169 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Cux1P53564 Zbp1-202ENSMUST00000109116 770 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Cux1P53564 Snrnp27-201ENSMUST00000001186 885 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cux1P53564 Fam47e-205ENSMUST00000175974 1016 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Cux1P53564 Gm26594-201ENSMUST00000180383 1094 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Cux1P53564 Kif4-ps-202ENSMUST00000185083 652 ntBASIC16.45■□□□□ 0.22
Cux1P53564 Gm3052-201ENSMUST00000186409 829 ntBASIC16.45■□□□□ 0.22
Cux1P53564 Gm2328-201ENSMUST00000193525 535 ntBASIC16.45■□□□□ 0.22
Cux1P53564 Gm37301-201ENSMUST00000195412 568 ntBASIC16.45■□□□□ 0.22
Cux1P53564 Gm44460-201ENSMUST00000196179 129 ntBASIC16.45■□□□□ 0.22
Cux1P53564 Gm17815-201ENSMUST00000198305 895 ntBASIC16.45■□□□□ 0.22
Cux1P53564 Gm44777-203ENSMUST00000206930 571 ntTSL 3 BASIC16.45■□□□□ 0.22
Cux1P53564 CAAA01139602.1-201ENSMUST00000222545 283 ntBASIC16.45■□□□□ 0.22
Cux1P53564 Speer2-201ENSMUST00000076500 1118 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
Cux1P53564 Esp6-201ENSMUST00000097324 658 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cux1P53564 Slc1a4-201ENSMUST00000004634 3872 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cux1P53564 Gm11427-201ENSMUST00000117952 1696 ntBASIC16.44■□□□□ 0.22
Cux1P53564 Zeb2os-201ENSMUST00000127150 1305 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Cux1P53564 Bckdk-207ENSMUST00000206745 1702 ntTSL 5 BASIC16.44■□□□□ 0.22
Cux1P53564 Zwilch-209ENSMUST00000176299 1831 ntTSL 5 BASIC16.44■□□□□ 0.22
Cux1P53564 Lgals8-201ENSMUST00000099820 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cux1P53564 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cux1P53564 Fam217b-201ENSMUST00000094251 4541 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cux1P53564 6030469F06Rik-202ENSMUST00000218473 1537 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Cux1P53564 Spag6l-201ENSMUST00000023468 2416 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cux1P53564 Slc6a5-202ENSMUST00000107605 2467 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cux1P53564 4933409D19Rik-201ENSMUST00000193674 1557 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Cux1P53564 Rasgrp4-211ENSMUST00000203380 3077 ntTSL 5 BASIC16.44■□□□□ 0.22
Cux1P53564 Pou2f1-206ENSMUST00000111429 2679 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Cux1P53564 Gm26642-201ENSMUST00000180981 2782 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Cux1P53564 Gm11701-201ENSMUST00000121277 1142 ntBASIC16.44■□□□□ 0.22
Cux1P53564 1700026D11Rik-205ENSMUST00000151417 789 ntTSL 3 BASIC16.44■□□□□ 0.22
Cux1P53564 Gm25154-201ENSMUST00000157123 119 ntBASIC16.44■□□□□ 0.22
Cux1P53564 1700028K03Rik-202ENSMUST00000159902 742 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Cux1P53564 Tead1-211ENSMUST00000170352 1218 ntTSL 5 BASIC16.44■□□□□ 0.22
Cux1P53564 Gm37390-201ENSMUST00000192452 872 ntBASIC16.44■□□□□ 0.22
Cux1P53564 Gimd1-205ENSMUST00000212852 1234 ntTSL 5 BASIC16.44■□□□□ 0.22
Cux1P53564 Tas2r135-201ENSMUST00000070178 1093 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
Cux1P53564 Gm23458-201ENSMUST00000083257 169 ntBASIC16.44■□□□□ 0.22
Cux1P53564 Hdac7-201ENSMUST00000079838 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cux1P53564 Dnajb6-201ENSMUST00000008733 2918 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Cux1P53564 Zfp512-208ENSMUST00000202244 3045 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Cux1P53564 Piezo1-209ENSMUST00000156333 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cux1P53564 Piezo1-201ENSMUST00000067252 8216 ntAPPRIS P2 TSL 5 BASIC16.43■□□□□ 0.22
Cux1P53564 Sgca-205ENSMUST00000166320 1428 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cux1P53564 Kmt2e-202ENSMUST00000115128 7317 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Cux1P53564 C2-206ENSMUST00000152417 2157 ntTSL 5 BASIC16.43■□□□□ 0.22
Cux1P53564 Sez6l2-201ENSMUST00000106332 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cux1P53564 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Cux1P53564 Hs1bp3-201ENSMUST00000020927 2959 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cux1P53564 Camta2-202ENSMUST00000100933 4383 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Cux1P53564 Etfrf1-201ENSMUST00000039729 2436 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cux1P53564 Dph6-203ENSMUST00000102542 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cux1P53564 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Cux1P53564 Myo18a-202ENSMUST00000092884 5117 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Cux1P53564 Fgf1-203ENSMUST00000117566 418 ntTSL 5 BASIC16.43■□□□□ 0.22
Cux1P53564 Gm14571-201ENSMUST00000118292 570 ntBASIC16.43■□□□□ 0.22
Cux1P53564 Gm12637-201ENSMUST00000130501 368 ntTSL 3 BASIC16.43■□□□□ 0.22
Cux1P53564 Gm42375-201ENSMUST00000206226 745 ntTSL 5 BASIC16.43■□□□□ 0.22
Cux1P53564 Gm46329-201ENSMUST00000218373 609 ntTSL 5 BASIC16.43■□□□□ 0.22
Cux1P53564 Tnfrsf14-205ENSMUST00000219534 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cux1P53564 AC114585.2-201ENSMUST00000227693 486 ntBASIC16.43■□□□□ 0.22
Cux1P53564 Cxcl3-201ENSMUST00000031326 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cux1P53564 Fthl17e-201ENSMUST00000096509 841 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Cux1P53564 Klhdc7b-202ENSMUST00000225666 3951 ntAPPRIS ALT2 BASIC16.43■□□□□ 0.22
Cux1P53564 Trmt2a-207ENSMUST00000140206 3520 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Cux1P53564 2410131K14Rik-201ENSMUST00000049138 5649 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cux1P53564 Gm32828-202ENSMUST00000219198 2111 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Cux1P53564 Cpa5-201ENSMUST00000062758 2187 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cux1P53564 Dcaf11-203ENSMUST00000117701 2311 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Cux1P53564 Gm29358-202ENSMUST00000187941 3227 ntBASIC16.42■□□□□ 0.22
Cux1P53564 Rplp1-ps1-201ENSMUST00000119410 345 ntBASIC16.42■□□□□ 0.22
Cux1P53564 Gm15587-202ENSMUST00000156403 709 ntTSL 5 BASIC16.42■□□□□ 0.22
Cux1P53564 Actb-207ENSMUST00000167721 1242 ntTSL 5 BASIC16.42■□□□□ 0.22
Cux1P53564 Scgb1b21-201ENSMUST00000170232 268 ntBASIC16.42■□□□□ 0.22
Cux1P53564 Mir3091-201ENSMUST00000175086 76 ntBASIC16.42■□□□□ 0.22
Cux1P53564 Gm38321-201ENSMUST00000195053 235 ntBASIC16.42■□□□□ 0.22
Cux1P53564 Gm5291-201ENSMUST00000201965 899 ntBASIC16.42■□□□□ 0.22
Cux1P53564 Gm44139-201ENSMUST00000204903 373 ntBASIC16.42■□□□□ 0.22
Cux1P53564 Gm45875-201ENSMUST00000212178 781 ntTSL 3 BASIC16.42■□□□□ 0.22
Cux1P53564 Gm3889-201ENSMUST00000212467 612 ntBASIC16.42■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 41.9 ms